Browse Element(s) Details


OsAffx.32166.1548.S1_s_at

Description tigr:9629.m05234
TID=OsAffx.32166.1548
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2074011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g1750011/11expressed protein
LOC_Os08g3941011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g0757011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g187708/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g187308/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g188408/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20720Os.21893.3.A1_at1/111+11509132..11512374NB-ARC domain containing protein
LOC_Os01g20730NANA1+11527263..11527894expressed protein
LOC_Os01g20740OsAffx.32166.1548.S1_s_at11/111+11532457..11535125retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g20750NANA1+11541752..11542409hypothetical protein
LOC_Os01g20760OsAffx.22940.2.S1_s_at8/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.18.S1_x_at7/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760Os.35344.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.3.S1_x_at6/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.5.S1_x_at4/111+11545011..11551360SWIM zinc finger family protein
LOC_Os01g20760OsAffx.22940.1.S1_s_at2/111+11545011..11551360SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32166.1548.S1_s_at--1058--86517Chr08:24907211..24907235 (25 bp)
TGTTGTTTTTGACGGAAAGCTTCCT
NONE
OsAffx.32166.1548.S1_s_at--279--67917Chr08:24907215..24907239 (25 bp)
GTTTTTGACGGAAAGCTTCCTGGAG
NONE
OsAffx.32166.1548.S1_s_at--1115--92917Chr08:24907218..24907242 (25 bp)
TTTGACGGAAAGCTTCCTGGAGTGT
NONE
OsAffx.32166.1548.S1_s_at--688--19317Chr08:24907222..24907246 (25 bp)
ACGGAAAGCTTCCTGGAGTGTACAT
NONE
OsAffx.32166.1548.S1_s_at--141--55717Chr08:24907225..24907249 (25 bp)
GAAAGCTTCCTGGAGTGTACATATC
NONE
OsAffx.32166.1548.S1_s_at--893--49117Chr08:24907229..24907253 (25 bp)
GCTTCCTGGAGTGTACATATCTTTT
NONE
OsAffx.32166.1548.S1_s_at--391--1717Chr08:24907245..24907269 (25 bp)
ATATCTTTTGAAGAGATAGTAGCCC
NONE
OsAffx.32166.1548.S1_s_at--415--76917Chr08:24907293..24907317 (25 bp)
GGTGGATTGTCATGGAAAAAATATA
NONE
OsAffx.32166.1548.S1_s_at--1088--81912Chr08:24907359..24907383 (25 bp)
GGAATAAACTACTACTTGGAACCAG
NONE
OsAffx.32166.1548.S1_s_at--1151--98112Chr08:24907363..24907387 (25 bp)
TAAACTACTACTTGGAACCAGCAGC
NONE
OsAffx.32166.1548.S1_s_at--933--18713Chr08:24907488..24907512 (25 bp)
ACGTATAAGGAATGCTTGACTAAGG
NONE
Target Sequence 
TGTTGTTTTTGACGGAAAGCTTCCTGGAGTGTACATATCTTTTGAAGAGATAGTAGCCCAAAAAATAGATGCAAAATTAA
TGGGTGGATTGTCATGGAAAAAATATATAGATTTTGATGAAGCTTTAACTCAGGCCAGAAAAATATTAGGAATAAACTAC
TACTTGGAACCAGCAGCAAAAGAATATATACAAAAATGCAAAAAAGCCAAAAATAAGAAAGCTCCAGAGAACCCATATTG
TTCAAATATTAAGAATGAAGGATCATCCCAAAAACCTACGTATAAGGAATGCTTGACTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32166.1548.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis