Browse Element(s) Details


Os.21874.1.S1_at

Description gb:AK101954.1
DB_XREF= gi:32987163
TID=Os.21874.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075J17, full insert sequence.
FL= gb:AK101954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3938011/11beta-2-xylosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein
LOC_Os08g39370Os.5210.1.S1_at11/118+24750412..24753503sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed
LOC_Os08g39390OsAffx.17417.2.S1_x_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.2.S1_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.1.S1_x_at3/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.29835.1.S1_x_at1/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006487biological_processprotein amino acid N-linked glycosylation
GO:0000139cellular_componentGolgi membrane
GO:0005797cellular_componentGolgi medial cisterna
GO:0042285molecular_functionxylosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21874.1.S1_at--178--8031Chr08:24758697..24758721 (25 bp)
GGAGGTTATTTGCATCTGTGATCTG
LOC_Os08g39380
Os.21874.1.S1_at--409--5471Chr08:24758723..24758747 (25 bp)
GAACTGATGCATTACCAGGGCTCAT
LOC_Os08g39380
Os.21874.1.S1_at--113--1091Chr08:24758739..24758763 (25 bp)
AGGGCTCATCACTTCATCGGAGGAA
LOC_Os08g39380
Os.21874.1.S1_at--912--491Chr08:24758754..24758778 (25 bp)
ATCGGAGGAATTTTTATGCTGCCAA
LOC_Os08g39380
Os.21874.1.S1_at--311--5611Chr08:24758806..24758830 (25 bp)
GACAATCTTTAATCTGCATATCGTG
LOC_Os08g39380
Os.21874.1.S1_at--559--10651Chr08:24758858..24758882 (25 bp)
TTCCTGACATCAGCCGACGACATGA
LOC_Os08g39380
Os.21874.1.S1_at--848--9151Chr08:24758897..24758921 (25 bp)
TGCGCACACTTTTCTACCATGAATT
LOC_Os08g39380
Os.21874.1.S1_at--921--10531Chr08:24758920..24758944 (25 bp)
TTCATGGTCTTGAGGACCGATCCTC
LOC_Os08g39380
Os.21874.1.S1_at--170--8111Chr08:24758933..24758957 (25 bp)
GGACCGATCCTCAAACTGTAATTGT
LOC_Os08g39380
Os.21874.1.S1_at--668--9591Chr08:24758961..24758985 (25 bp)
TCATCATTTGGGACATTCGGCGACA
LOC_Os08g39380
Os.21874.1.S1_at--84--9071Chr08:24759001..24759025 (25 bp)
TGCATAATGTTGAGTGCTTCTCCCC
LOC_Os08g39380
Target Sequence 
GGAGGTTATTTGCATCTGTGATCTGTGAACTGATGCATTACCAGGGCTCATCACTTCATCGGAGGAATTTTTATGCTGCC
AAATGCAGAGAGAGATTGTGCTGACAAGTGACAATCTTTAATCTGCATATCGTGTGGAACAAGAAGGCAATCCTTCCCCC
CTTCCTGACATCAGCCGACGACATGAAAACCAATCCATGCTGCGCACACTTTTCTACCATGAATTCATGGTCTTGAGGAC
CGATCCTCAAACTGTAATTGTAATTCATCATTTGGGACATTCGGCGACAATTCTTGTATGTTAATGCATAATGTTGAGTG
CTTCTCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis