Browse Element(s) Details


OsAffx.6083.1.S1_at

Description tigr:9636.m03976
TID=OsAffx.6083.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3936011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein
LOC_Os08g39370Os.5210.1.S1_at11/118+24750412..24753503sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6083.1.S1_at--328--9411Chr08:24746950..24746974 (25 bp)
TCGTGCACGAACGTCGCGTTTCTAA
LOC_Os08g39360
OsAffx.6083.1.S1_at--45--5451Chr08:24746942..24746966 (25 bp)
GAACGTCGCGTTTCTAACCGATGGG
LOC_Os08g39360
OsAffx.6083.1.S1_at--136--9151Chr08:24746906..24746930 (25 bp)
TGCGATGCATGCAGGGCCTGGCTAC
LOC_Os08g39360
OsAffx.6083.1.S1_at--224--5891Chr08:24746776..24746800 (25 bp)
GAGCTGGGCTGGTGCGAGGACACAG
LOC_Os08g39360
OsAffx.6083.1.S1_at--490--6191Chr08:24746761..24746785 (25 bp)
GAGGACACAGATGCGTGGGCATACA
LOC_Os08g39360
OsAffx.6083.1.S1_at--1150--8631Chr08:24746746..24746770 (25 bp)
TGGGCATACACGCAGCCGGTGTCCA
LOC_Os08g39360
OsAffx.6083.1.S1_at--1086--3971Chr08:24746730..24746754 (25 bp)
CGGTGTCCACGCTGGCGATGCAGGG
LOC_Os08g39360
OsAffx.6083.1.S1_at--545--9391Chr08:24746546..24746570 (25 bp)
TCGTCGGACGGGAAGAACAATCGTC
LOC_Os08g39360
OsAffx.6083.1.S1_at--373--8051Chr08:24746497..24746521 (25 bp)
GGAGAGACTGACATCCTGGGCGCAC
LOC_Os08g39360
OsAffx.6083.1.S1_at--143--1411Chr08:24746493..24746517 (25 bp)
AGACTGACATCCTGGGCGCACGTAG
LOC_Os08g39360
OsAffx.6083.1.S1_at--55--571Chr08:24746485..24746509 (25 bp)
ATCCTGGGCGCACGTAGGGCAATCT
LOC_Os08g39360
Target Sequence 
TCGTGCACGAACGTCGCGTTTCTAACCGATGGGGTCGCCGGCGATGCGATGCATGCAGGGCCTGGCTACGACGACGCGAG
ACCGTACACCGTGCTGTTCCACCCGCTGACGGGGCGCTGCGTGGTGAGGCGGGCGGCAGATGACGCGGCGGCGGCAACGG
CAGCGGGGACGCTGGAGCTGGGCTGGTGCGAGGACACAGATGCGTGGGCATACACGCAGCCGGTGTCCACGCTGGCGATG
CAGGGCGTGTGGCGGGGGTCACCGCCGCTCTGCCTGAGAGCCGTGGGGAGCGGCCGGCCGGCACGGCTCGCCACCAACGA
CGCCGCTGCCGACGCCGCTGGCTGCCGCGGCGACGCCCGACTGCTCCGGGAACGCCGAGCTGCGCGAGCTGCGCCGGGGA
TGCGTCGTCGGACGGGAAGAACAATCGTCGGGAGGAAGAGGAAAGAAAATAGAGGAGAGACTGACATCCTGGGCGCACGT
AGGGCAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis