Browse Element(s) Details


Os.6423.1.S1_at

Description gb:AK103001.1
DB_XREF= gi:32988210
TID=Os.6423.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033116G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033116G04, full insert sequence.
FL= gb:AK103001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3933011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6423.1.S1_at--951--1311Chr08:24722312..24722336 (25 bp)
AGAGGCCAAAGAGGCAGAGCCTGCA
LOC_Os08g39330
Os.6423.1.S1_at--890--7391Chr08:24722631..24722655 (25 bp)
GTGTTGTGTAATGAATTGGGCTCCA
LOC_Os08g39330
Os.6423.1.S1_at--1081--10831Chr08:24722646..24722670 (25 bp)
TTGGGCTCCAATAAAAATGTGTCAG
LOC_Os08g39330
Os.6423.1.S1_at--843--2971Chr08:24722661..24722685 (25 bp)
AATGTGTCAGGTTGGCTACCGGGCC
LOC_Os08g39330
Os.6423.1.S1_at--500--9971Chr08:24722677..24722701 (25 bp)
TACCGGGCCCAGTGTCAGTAGGTGC
LOC_Os08g39330
Os.6423.1.S1_at--326--9111Chr08:24722699..24722723 (25 bp)
TGCTGACGTGGCAGGTCATCACTGG
LOC_Os08g39330
Os.6423.1.S1_at--1128--8491Chr08:24722707..24722731 (25 bp)
TGGCAGGTCATCACTGGCCCTGGAG
LOC_Os08g39330
Os.6423.1.S1_at--212--5911Chr08:24722729..24722753 (25 bp)
GAGCTCGTGCCCGTGTATGTTCTCG
LOC_Os08g39330
Os.6423.1.S1_at--705--7291Chr08:24722735..24722759 (25 bp)
GTGCCCGTGTATGTTCTCGGTCTGT
LOC_Os08g39330
Os.6423.1.S1_at--63--7191Chr08:24722754..24722778 (25 bp)
GTCTGTGTTGTGGTTTCATCGTTAA
LOC_Os08g39330
Os.6423.1.S1_at--189--4871Chr08:24722783..24722807 (25 bp)
GCTAGTAATAATTTTCCGTATCTTT
LOC_Os08g39330
Target Sequence 
AGAGGCCAAAGAGGCAGAGCCTGCAGCCGCCGAGGAGGCCGAGCCGGAGGCGGAGACGGCGCCGCCGGCGGCGATCGCCG
AGGCCGAGGCAGGTGAGGCGAAAGAACCGGAGCCAGAGGCAGAGGCAGAGGCGGCGGCCGCTCCCGTCGAAGAAGCTGCT
GCGGCGCCCGTCGAGGTGGCGGAGGAGGCTGAGGCGGCGCCACCGGCCGCACCCGAGGTGGCTGCCGTCGAGGCCACCGA
GTGAGCTGGCGAGAGATGGCGAGCCGGAGATGAAGCTGATGGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGTACGTGTG
TGTTGTGTAATGAATTGGGCTCCAATAAAAATGTGTCAGGTTGGCTACCGGGCCCAGTGTCAGTAGGTGCTGACGTGGCA
GGTCATCACTGGCCCTGGAGCTCGTGCCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTAAAAATGCTAGTAAT
AATTTTCCGTATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis