Browse Element(s) Details


Os.10113.1.S1_at

Description gb:AK064774.1
DB_XREF= gi:32974792
TID=Os.10113.1
CNT=201
FEA=FLmRNA
TIER=FL+Stack
STK=37
UG=Os.10113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000A23, full insert sequence.
FL= gb:AK099206.1 gb:AK064774.1 gb:AK065126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3930011/11Serine-glyoxylate aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein
LOC_Os08g39330Os.6423.1.S1_at11/118+24721442..24722816expressed protein
LOC_Os08g39330Os.26088.1.A1_x_at7/118+24721442..24722816expressed protein
LOC_Os08g39330Os.15871.1.A1_at2/118+24721442..24722816expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0005777cellular_componentperoxisome
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10113.1.S1_at--929--971Chr08:24695954..24695978 (25 bp)
AGGAGTGGTTCAGCGACACCGTCAC
LOC_Os08g39300
Os.10113.1.S1_at--89--5651Chr08:24695904..24695928 (25 bp)
GACAGCGCCGAGATCGTGAAGCACG
LOC_Os08g39300
Os.10113.1.S1_at--387--5391Chr08:24695887..24695911 (25 bp)
GAAGCACGCCTGGAAGCGGTACAAC
LOC_Os08g39300
Os.10113.1.S1_at--142--1871Chr08:24695700..24695721 (22 bp)
ACGAGCTGCAATTGATGGGTGCCCT
LOC_Os08g39300
Os.10113.1.S1_at--458--2931Chr08:24695653..24695677 (25 bp)
AAGGACATCGGCTACCCGGTGAAGC
LOC_Os08g39300
Os.10113.1.S1_at--471--8351Chr08:24695606..24695630 (25 bp)
GGCGGCGTACCTGTCGAATTCGACG
LOC_Os08g39300
Os.10113.1.S1_at--469--551Chr08:24695575..24695599 (25 bp)
ATCCCGTCCAGGATCTGAAGCACAA
LOC_Os08g39300
Os.10113.1.S1_at--240--5571Chr08:24695537..24695561 (25 bp)
GAAAGCAATTCTCAGCAGCGATGGT
LOC_Os08g39300
Os.10113.1.S1_at--638--4051Chr08:24695519..24695543 (25 bp)
CGATGGTTCTGCCTGCAGTTTGGCA
LOC_Os08g39300
Os.10113.1.S1_at--355--6751Chr08:24695438..24695462 (25 bp)
GTTAAATTTTTATACGCTCCATCGA
LOC_Os08g39300
Os.10113.1.S1_at--349--4792Chr11:16775210..16775614 (25 bp)
GCTCCATCGATCAGCTCTATGCTAA
NONE
Target Sequence 
AGGAGTGGTTCAGCGACACCGTCACCGCCGTCGTCGTGCCGCCGTACATCGACAGCGCCGAGATCGTGAAGCACGCCTGG
AAGCGGTACAACCTCAGCCTCGGCCTCGGCCTCAACAAGGTCGCCGGCAAGGTGTTCAGGATCGGCCACCTCGGCCACCT
CAACGAGCTGCAATTGATGGGTGCCCTGAGTGGAGTGGAGATGGTGCTCAAGGACATCGGCTACCCGGTGAAGCTCGGCT
CCGGCGTGGCGGCGGCGGCGGCGTACCTGTCGAATTCGACGCCGCTCATCCCGTCCAGGATCTGAAGCACAACGAACGAA
GGAAGGAAAGCAATTCTCAGCAGCGATGGTTCTGCCTGCAGTTTGGCAGAACGGAACAGCGGCAAATTAATCCTATTGCA
TATAATTTGGTCTCTGTATGTAAAGTTAAATTTTTATACGCTCCATCGATCAGCTCTATGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis