Browse Element(s) Details


Os.54871.1.S1_at

Description gb:AK106964.1
DB_XREF= gi:32992173
TID=Os.54871.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-F09, full insert sequence.
FL= gb:AK106964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3927010/11Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54871.1.S1_at--431--8351Chr08:24686079..24686103 (25 bp)
GGCGGCGAGTACACGGTCAACGTCA
LOC_Os08g39270
Os.54871.1.S1_at--471--8611Chr08:24686045..24686069 (25 bp)
TGGGCACCGTCCATGTCGGGTCGAT
LOC_Os08g39270
Os.54871.1.S1_at--366--7691Chr08:24686028..24686052 (25 bp)
GGGTCGATGTGGTCCAACCCCAAGA
LOC_Os08g39270
Os.54871.1.S1_at--924--9531Chr08:24685967..24685991 (25 bp)
TCTACGAGGTGGACAGGGTGCTCCT
LOC_Os08g39270
Os.54871.1.S1_at--244--6331Chr08:24685939..24685963 (25 bp)
GATGCAGATCTTCAGGACCGACCCG
LOC_Os08g39270
Os.54871.1.S1_at--746--71Chr08:24685764..24685788 (25 bp)
ATTGCCGGCTACTTCTTGGCTCTTG
LOC_Os08g39270
Os.54871.1.S1_at--703--9111Chr08:24685741..24685765 (25 bp)
TGCTGCATCTGCCTCAGCTGGATTG
LOC_Os08g39270
Os.54871.1.S1_at--722--9111Chr08:24685718..24685742 (25 bp)
TGCTGCTCCTGTGTTGATGCTAAGA
LOC_Os08g39270
Os.54871.1.S1_at--1051--8031Chr08:24685592..24685616 (25 bp)
GGAGTATTTCCGTCATATGCTTGTA
LOC_Os08g39270
Os.54871.1.S1_at--683--7191NONE
GTCGATGACTACTTGTTTATCCGAT
NONE
Os.54871.1.S1_at--1087--6811Chr08:24685547..24685571 (25 bp)
GTTTATCCGATGCATGTTGCGAATT
LOC_Os08g39270
Target Sequence 
GGCGGCGAGTACACGGTCAACGTCACCGACGACATGGGCACCGTCCATGTCGGGTCGATGTGGTCCAACCCCAAGATCAG
CAGCAGCGTCTACTCCACCCGCCCCGTCGCCGTCTACGAGGTGGACAGGGTGCTCCTCCCGATGCAGATCTTCAGGACCG
ACCCGCCCATGGCGCCGTCGCCGGCGCCGGCGCCGGACGCCAAGCCGGCCTCCGACGCCGCCAGCCCGCTCCCCGGGAAG
TCGTCGAGCGCCAAGGCGAAGGCGGACGAGAAGAAGAGCTCGTCGTCGCCGCCGTCGTCGCGCCGCGGCGCCGGCATTGC
CGGCTACTTCTTGGCTCTTGCTGCATCTGCCTCAGCTGGATTGCTGCTCCTGTGTTGATGCTAAGAAACTTTTCTAATTC
TTTTTTTTTTTGCATGGATTGTTGGTTGCTGGATAATTTTATTCTTTGGACATAGTAGGGGCATTGTGTTAGGATTAAGT
TTTATGGGAGTATTTCCGTCATATGCTTGTATGATTAGTCGATGACTACTTGTTTATCCGATGCATGTTGCGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis