Browse Element(s) Details


Os.55246.1.S1_x_at

Description gb:AK107730.1
DB_XREF= gi:32992939
TID=Os.55246.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-F07, full insert sequence.
FL= gb:AK107730.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3929011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55246.1.S1_x_at--124--2211Chr08:24694423..24694447 (25 bp)
ACAACATTTGTCAAGATGAGCGTGG
LOC_Os08g39290
Os.55246.1.S1_x_at--1114--1571Chr08:24694580..24694604 (25 bp)
AGCTCATGGCGCTCCGCGTGCTGGA
LOC_Os08g39290
Os.55246.1.S1_x_at--1134--9111Chr08:24694598..24694622 (25 bp)
TGCTGGACACCCACTTCGGCGTCGA
LOC_Os08g39290
Os.55246.1.S1_x_at--89--8231Chr08:24694693..24694717 (25 bp)
GGCAAGGTCGGCCTCCACGAGTTCC
LOC_Os08g39290
Os.55246.1.S1_x_at--473--9311Chr08:24694769..24694793 (25 bp)
TCCCCGTCCAGATGGTCGTCGAGGA
LOC_Os08g39290
Os.55246.1.S1_x_at--1144--8491Chr08:24694794..24694818 (25 bp)
TGGCAGCTTCCTCAAGGTGGCCGTC
LOC_Os08g39290
Os.55246.1.S1_x_at--1119--9351Chr08:24694817..24694841 (25 bp)
TCGACAGGGAGCTCGCCAAGGCCGC
LOC_Os08g39290
Os.55246.1.S1_x_at--1150--8391Chr08:24694836..24694860 (25 bp)
GGCCGCCTAATTCAATAACCTAGCT
LOC_Os08g39290
Os.55246.1.S1_x_at--776--3711Chr08:24694859..24694883 (25 bp)
CTAGCTAATTAACCACATTGAACTA
LOC_Os08g39290
Os.55246.1.S1_x_at--918--11Chr08:24694875..24694899 (25 bp)
ATTGAACTAGCCCACGACGATTAAT
LOC_Os08g39290
Os.55246.1.S1_x_at--516--2351Chr08:24694887..24694911 (25 bp)
CACGACGATTAATTTGAGTACTTTG
LOC_Os08g39290
Target Sequence 
ACAACATTTGTCAAGATGAGCGTGGAGATCGTGGACGGGAGCACGGTGCGGAGCTTCGTGGACGACGAGGCCGCCTTCAA
CGCGTCGGTGGACGGGCGCTTCGCGGCGCTGGACGCCGACCGCGACGGCGTCCTCTCCTACGCCGACATGTCCGGGGAGC
TCATGGCGCTCCGCGTGCTGGACACCCACTTCGGCGTCGACGACGGCCACGGCGGCGCCGACGACGGGCTCTACCGCGGC
CTCTTCGCCCGCTTCGACCGCGACGGCGACGGCAAGGTCGGCCTCCACGAGTTCCGCGCCGAGATGAAGGAGGTCATGCT
CGTCGTCGCCAATGGCCTCGGCTTCCTCCCCGTCCAGATGGTCGTCGAGGATGGCAGCTTCCTCAAGGTGGCCGTCGACA
GGGAGCTCGCCAAGGCCGCCTAATTCAATAACCTAGCTAGCTAATTAACCACATTGAACTAGCCCACGACGATTAATTTG
AGTACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55246.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis