Browse Element(s) Details


OsAffx.6082.1.S1_at

Description tigr:9636.m03967
TID=OsAffx.6082.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3928010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein
LOC_Os08g39260NANA8+24680176..24681321transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g39270Os.54871.1.S1_at10/118+24685538..24687609Fasciclin-like arabinogalactan protein 7 precursor, putative, expressed
LOC_Os08g39280OsAffx.6082.1.S1_at10/118+24690318..24693387hypothetical protein
LOC_Os08g39290Os.55246.1.S1_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39290Os.55246.1.S1_x_at11/118+24694376..24694951EF hand family protein, expressed
LOC_Os08g39300Os.10113.1.S1_at11/118+24695267..24698022Serine-glyoxylate aminotransferase, putative, expressed
LOC_Os08g39310Os.12517.1.A1_at11/118+24704847..24709249SWIB/MDM2 domain containing protein, expressed
LOC_Os08g39320OsAffx.17415.1.S1_at11/118+24710021..24711341hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6082.1.S1_at--648--9291Chr08:24692432..24692456 (25 bp)
TCCCCACAAGGTCAGGGTTGCTAGA
LOC_Os08g39280
OsAffx.6082.1.S1_at--688--9711Chr08:24692405..24692429 (25 bp)
TAATTGCCACAAGCTCGAGGTCAGT
LOC_Os08g39280
OsAffx.6082.1.S1_at--696--7871Chr08:24691986..24692010 (25 bp)
GGTTCGAAGCAATCAACTCGTCTTG
LOC_Os08g39280
OsAffx.6082.1.S1_at--164--3611Chr08:24691965..24691989 (25 bp)
CTTGATGAATCGAGTCGGGCCCGAT
LOC_Os08g39280
OsAffx.6082.1.S1_at--1035--7551Chr08:24691949..24691973 (25 bp)
GGGCCCGATGCTTTTTTAGTCATGA
LOC_Os08g39280
OsAffx.6082.1.S1_at--1150--651Chr08:24691928..24691952 (25 bp)
ATGAACTCCCCATAGATGCCGATTC
LOC_Os08g39280
OsAffx.6082.1.S1_at--350--4011Chr08:24691870..24691894 (25 bp)
CGTCTTCGTGTTACCGGTTGGAGAG
LOC_Os08g39280
OsAffx.6082.1.S1_at--708--6931Chr08:24691054..24691078 (25 bp)
GTAGGAGCAGTCAGTGCTTCACAAT
LOC_Os08g39280
OsAffx.6082.1.S1_at--102--6671Chr08:24691000..24691024 (25 bp)
GTTGCAATGCATCCGAAACTGTGTG
LOC_Os08g39280
OsAffx.6082.1.S1_at--171--1971NONE
ACTGTCCTGTTCATTTCCATTGGTG
NONE
OsAffx.6082.1.S1_at--1150--2911Chr08:24690353..24690377 (25 bp)
AAGGACCAAGGTCTCTGCTCTTCAA
LOC_Os08g39280
Target Sequence 
TCCCCACAAGGTCAGGGTTGCTAGATCTAATTGCCACAAGCTCGAGGTCAGTGAGATCGAAGCGATACGTTGGATTTGCG
ATGATTTTGAGGCTCAATTTCTGAATATTGATCTTGGTTCGAAGCAATCAACTCGTCTTGATGAATCGAGTCGGGCCCGA
TGCTTTTTTAGTCATGAACTCCCCATAGATGCCGATTCCCAATCCGGCTGCGATGAGTCCCCTCATCGTACCGTCTTCGT
GTTACCGGTTGGAGAGTCCGATATCTATGTGAGATTCCCAACATCTATTAGGCATCACATGGATGGGAGCTACAACTATT
ACGACAAGCCTGAAGTGGTAGGAGCAGTCAGTGCTTCACAATTTGTTCAATTTGCTGGAAGTTTTGATAGAGTTGCAATG
CATCCGAAACTGTGTGATTTTGATAGGAGAACCGATAATTTTCGTAGCACACAAACCGATAATTTTGATAGGACTGTCCT
GTTCATTTCCATTGGTGAAAAGCAGAGGAGGCATACTGAAAGGCCCCAAGAGGCCAAGAACAAGGACCAAGGTCTCTGCT
CTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis