Browse Element(s) Details


Os.26047.1.S1_x_at

Description gb:AK072089.1
DB_XREF= gi:32982112
TID=Os.26047.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013116B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116B08, full insert sequence.
FL= gb:AK072089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3942011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39390OsAffx.17417.2.S1_x_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.2.S1_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.1.S1_x_at3/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.29835.1.S1_x_at1/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26047.1.S1_x_at--163--10391Chr08:24797957..24797981 (25 bp)
TTTTGATTGCTGTGCCGATTCCCAA
LOC_Os08g39420
Os.26047.1.S1_x_at--361--6571Chr08:24797941..24797965 (25 bp)
GATTCCCAAGGAACATGCAGCTTCA
LOC_Os08g39420
Os.26047.1.S1_x_at--488--1511Chr08:24797875..24797899 (25 bp)
AGCAGAGTATTGTCCTTACTCCCAA
LOC_Os08g39420
Os.26047.1.S1_x_at--867--9091Chr08:24797845..24797869 (25 bp)
TGCTCTCTCACTTTATCTTTTCTGT
LOC_Os08g39420
Os.26047.1.S1_x_at--961--5691Chr08:24797787..24797811 (25 bp)
GACTTTCTATGTTGTTTCAGGGATA
LOC_Os08g39420
Os.26047.1.S1_x_at--569--10171Chr08:24797758..24797782 (25 bp)
TATAATAGGCAACGCGATCACTCCC
LOC_Os08g39420
Os.26047.1.S1_x_at--355--391Chr08:24797742..24797766 (25 bp)
ATCACTCCCTTCATGCTTGACAGAG
LOC_Os08g39420
Os.26047.1.S1_x_at--1109--1171Chr08:24797713..24797737 (25 bp)
AGTACTAACTGGACGATCTTCGCTA
LOC_Os08g39420
Os.26047.1.S1_x_at--539--2231Chr08:24797416..24797440 (25 bp)
ACAATGCTCTTGTTGGTGCTAAAAT
LOC_Os08g39420
Os.26047.1.S1_x_at--379--7311Chr08:24797401..24797425 (25 bp)
GTGCTAAAATTGCTGTGGCCCTTTC
LOC_Os08g39420
Os.26047.1.S1_x_at--412--8411Chr08:24797385..24797409 (25 bp)
GGCCCTTTCTGATCTTCACCAGAGA
LOC_Os08g39420
Target Sequence 
TTTTGATTGCTGTGCCGATTCCCAAGGAACATGCAGCTTCAGGAAATGCTATAGAGTCTGCAATACAGAAAGCCCTCAAG
GAAGCAGAGTATTGTCCTTACTCCCAACCTCCTGCTCTCTCACTTTATCTTTTCTGTGTATTTGTGATACTAACAGAAAT
GATATCTAATGACTTTCTATGTTGTTTCAGGGATAAAAATATAATAGGCAACGCGATCACTCCCTTCATGCTTGACAGAG
TGAAAGTACTAACTGGACGATCTTCGCTAGAAGCCAATATTGCGCTTGTAAAGAACAATGCTCTTGTTGGTGCTAAAATT
GCTGTGGCCCTTTCTGATCTTCACCAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26047.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis