Browse Element(s) Details


Os.47358.1.A1_at

Description gb:AK062330.1
DB_XREF= gi:32972348
TID=Os.47358.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47358 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D09, full insert sequence.
FL= gb:AK062330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3943011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39400OsAffx.6084.1.S1_at11/118+24781793..24782206hypothetical protein
LOC_Os08g39410OsAffx.32166.1548.S1_s_at11/118+24784525..24790499retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39420Os.26047.1.S1_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_s_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.1.S1_x_at11/118+24796731..24801938expressed protein
LOC_Os08g39420Os.26047.2.S1_at4/118+24796731..24801938expressed protein
LOC_Os08g39430Os.47358.1.A1_at11/118+24802771..24803773expressed protein
LOC_Os08g39440Os.7534.2.S1_a_at11/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39440Os.2240.2.A1_at1/118+24805873..24814078RNA recognition motif family protein, expressed
LOC_Os08g39450Os.12139.1.S1_at2/118+24821094..24822077Multiple stress-responsive zinc-finger protein ISAP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47358.1.A1_at--265--5651Chr08:24803201..24803225 (25 bp)
GACAGCGAGTTCTTCAACCCGCGGA
LOC_Os08g39430
Os.47358.1.A1_at--746--10511Chr08:24803213..24803237 (25 bp)
TTCAACCCGCGGAAGCGGTCGGAGC
LOC_Os08g39430
Os.47358.1.A1_at--636--7191Chr08:24803230..24803254 (25 bp)
GTCGGAGCGGGAGTACCTCACGTTC
LOC_Os08g39430
Os.47358.1.A1_at--870--9491Chr08:24803436..24803460 (25 bp)
TCTCCGTGACGTGCGCGCGGAACAA
LOC_Os08g39430
Os.47358.1.A1_at--436--4691Chr08:24803452..24803476 (25 bp)
GCGGAACAAGCTGTACGCGCACTTC
LOC_Os08g39430
Os.47358.1.A1_at--165--9031Chr08:24803529..24803553 (25 bp)
TGCACCAGTCGTTCAAGACCGTCGA
LOC_Os08g39430
Os.47358.1.A1_at--520--10071Chr08:24803582..24803606 (25 bp)
TAGTCCTAGCTAGCCATTGTTCGCC
LOC_Os08g39430
Os.47358.1.A1_at--306--6111Chr08:24803622..24803646 (25 bp)
GAGTCCACGACTTGTCTCGATCGAG
LOC_Os08g39430
Os.47358.1.A1_at--542--9391Chr08:24803638..24803662 (25 bp)
TCGATCGAGTGGAGAGCTAGCAGCT
LOC_Os08g39430
Os.47358.1.A1_at--609--5911Chr08:24803651..24803675 (25 bp)
GAGCTAGCAGCTGGGCGAAACAATT
LOC_Os08g39430
Os.47358.1.A1_at--420--1831Chr08:24803739..24803763 (25 bp)
ACGCGTAATCAAACATTGTCCTGTA
LOC_Os08g39430
Target Sequence 
GACAGCGAGTTCTTCAACCCGCGGAAGCGGTCGGAGCGGGAGTACCTCACGTTCCTCNCCGGNTTCCGGGCNCTGGCNCC
GGTNGGCNCCGTGCTCGNCAACCTCGCGCTCTCCGACGTCGGGCTNCAGGACCAGATCGCGTCGGCGGACGGCGTGCTGT
CGACGGAGCGGAGGGACGGCGGCGGGCAGCTCTACTACGAGTACGAGATCNCCGGCGCCGGCGCGCACAGCCTCATCTCC
GTGACGTGCGCGCGGAACAAGCTGTACGCGCACTTCGTGACGGCGCCCAACCCGGAGTGGAGCCGCGACGAGGCCGTCCT
CCGCCGGCTGCACCAGTCGTTCAAGACCGTCGACCCCGCCNGNCCGCCGCCGGCTAGCTCCTAGTCCTAGCTAGCCATTG
TTCGCCGCCGCCGGCCGGCCGGAGTCCACGACTTGTCTCGATCGAGTGGAGAGCTAGCAGCTGGGCGAAACAATTTNTAG
TANCTTTGCTGCCCGAGNATGTAATTAAANCAGTTTTGTATAAATTATGGATNTACTATACGCGTAATCAAACATTGTCC
TGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47358.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis