Browse Element(s) Details


Os.27631.1.S1_at

Description gb:AK119765.1
DB_XREF= gi:37989388
TID=Os.27631.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.16 (P0683F02.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A01, full insert sequence.
FL= gb:AK119765.1 gb:AK070663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6395011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63940Os.55646.1.S1_at11/111+37445313..37447791Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g63950Os.27631.1.S1_at11/111+37449981..37453698expressed protein
LOC_Os01g63960OsAffx.10048.1.S1_x_at11/111+37455270..37459619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g63970Os.31344.1.S1_at11/111+37460552..37462168sialyltransferase, putative, expressed
LOC_Os01g63980Os.36152.1.S1_at11/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.2.S1_x_at2/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.17417.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed
LOC_Os01g63980OsAffx.29835.1.S1_x_at1/111+37473768..37475968Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27631.1.S1_at--336--8711Chr01:37453167..37453191 (25 bp)
TGTCCAGTCAGTTTCATGCAGCATA
LOC_Os01g63950
Os.27631.1.S1_at--121--1751Chr01:37453192..37453216 (25 bp)
ACCTTTTCAGGTTTGCATGCCAATG
LOC_Os01g63950
Os.27631.1.S1_at--746--3531Chr01:37453207..37453231 (25 bp)
CATGCCAATGGTGTTCTGTGCTGAT
LOC_Os01g63950
Os.27631.1.S1_at--789--8811Chr01:37453228..37453252 (25 bp)
TGATTAACTTCCTGAGCCACTGAGT
LOC_Os01g63950
Os.27631.1.S1_at--651--6091Chr01:37453249..37453273 (25 bp)
GAGTCCCCTAAGATATGCTGTCAAA
LOC_Os01g63950
Os.27631.1.S1_at--161--3851Chr01:37453326..37453350 (25 bp)
CTGCATTGTGAACATCTCTTCTGGC
LOC_Os01g63950
Os.27631.1.S1_at--915--5051Chr01:37453349..37453373 (25 bp)
GCAGCAGATGTCCTCCACAATAGAA
LOC_Os01g63950
Os.27631.1.S1_at--842--10011Chr01:37453369..37453393 (25 bp)
TAGAATCTGTGAACCTGCCATCAAC
LOC_Os01g63950
Os.27631.1.S1_at--272--2491Chr01:37453391..37453415 (25 bp)
AACAGCATCCTTCAAATCATCCATG
LOC_Os01g63950
Os.27631.1.S1_at--1050--1331Chr01:37453543..37453567 (25 bp)
AGAGTCGGACTCTATAACCTAGCAA
LOC_Os01g63950
Os.27631.1.S1_at--478--2231Chr01:37453661..37453685 (25 bp)
AAACCCCAGGACATAAGCTTCGGCT
LOC_Os01g63950
Target Sequence 
TGTCCAGTCAGTTTCATGCAGCATAACCTTTTCAGGTTTGCATGCCAATGGTGTTCTGTGCTGATTAACTTCCTGAGCCA
CTGAGTCCCCTAAGATATGCTGTCAAATGTTTGATTAAACTGGCCGAGTTACCAGATCATTTCCTCTCCGCAATAATCTC
TGCATTGTGAACATCTCTTCTGGCAGCAGATGTCCTCCACAATAGAATCTGTGAACCTGCCATCAACAGCATCCTTCAAA
TCATCCATGCCCATTGACAATTACTCGCAAGGAACGGGGGAGATCTAAGAAAATTGTTAGAATAGATGTCGAATATACTA
ATTCTATTTGGTTACAGTTGGATTTAAAGTTGTAATAGGTGGTAGGGGGTAGAGGTAGAGTCGGACTCTATAACCTAGCA
ACTCTCTTAAATAGAGAGGCATGGAGATGATGGTGGTGTGGCCATGGACTTGTAGCGGCTAGGAGTTATATGGGTTGAGG
AGCGCCCATAATCAAAACCCCAGGACATAAGCTTCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis