Browse Element(s) Details


Os.55646.1.S1_at

Description gb:AK108478.1
DB_XREF= gi:32993687
TID=Os.55646.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F01, full insert sequence.
FL= gb:AK108478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6394011/11Transcription initiation factor TFIID subunit A family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63940Os.55646.1.S1_at11/111+37445313..37447791Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g63950Os.27631.1.S1_at11/111+37449981..37453698expressed protein
LOC_Os01g63960OsAffx.10048.1.S1_x_at11/111+37455270..37459619retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g63970Os.31344.1.S1_at11/111+37460552..37462168sialyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0009908biological_processflower development
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0016481biological_processnegative regulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55646.1.S1_at--527--5151Chr01:37446255..37446275 (21 bp)
GCAACATTTGCTTGTTCTTTACAGC
LOC_Os01g63940
Os.55646.1.S1_at--764--751Chr01:37446082..37446217 (25 bp)
ATGTACTCCTCCATGCAGAGAGAAG
LOC_Os01g63940
Os.55646.1.S1_at--536--8211Chr01:37446055..37446079 (25 bp)
GGAATATTACCTTGCCAGGCTTCAG
LOC_Os01g63940
Os.55646.1.S1_at--959--5411Chr01:37445903..37446030 (25 bp)
GAAGCCGCATGTCAATGATATTCAC
LOC_Os01g63940
Os.55646.1.S1_at--723--6451Chr01:37445628..37445652 (25 bp)
GATCAAGAAGTCAATGGCCAGCGAA
LOC_Os01g63940
Os.55646.1.S1_at--861--2591Chr01:37445600..37445624 (25 bp)
AACGCAAAGGGCTCTGCTGCGCAAG
LOC_Os01g63940
Os.55646.1.S1_at--153--4411Chr01:37445537..37445561 (25 bp)
GCCACAGGCTCTCCATGAAAGAAAT
LOC_Os01g63940
Os.55646.1.S1_at--1117--3031Chr01:37445493..37445517 (25 bp)
AATCCTGAGCCATCAATGCATTGTC
LOC_Os01g63940
Os.55646.1.S1_at--170--9071Chr01:37445477..37445501 (25 bp)
TGCATTGTCATCATATTCGGTGTTT
LOC_Os01g63940
Os.55646.1.S1_at--162--31Chr01:37445420..37445444 (25 bp)
ATTGGCATTGGCTTGTTGTATTATA
LOC_Os01g63940
Os.55646.1.S1_at--138--6631Chr01:37445382..37445406 (25 bp)
GTTGGGACCGTTAGTAGGACTGCAA
LOC_Os01g63940
Target Sequence 
GCAACATTTGCTTGTTCTTTACAGCAAAACATAGAAAGTCAAGCATTTTAGAAGCAAAAGATGTACTCCTCCATGCAGAG
AGAAGCTGGAATATTACCTTGCCAGGCTTCAGTGGAGATGAAATAAAACTGTACAAGAAGCCGCATGTCAATGATATTCA
CAGGGAGAGGCTTACTCTGATCAAGAAGTCAATGGCCAGCGAAAGTAACGCAAAGGGCTCTGCTGCGCAAGCTGCAGCTA
ACCAGAAAAATCAGACACCCAAGCCACCTGCCACAGGCTCTCCATGAAAGAAATTCAATAGGATTACCCTCCAAATCCTG
AGCCATCAATGCATTGTCATCATATTCGGTGTTTGGACGATATGTGCTGTAGTACATCTTCAACTAATTGGCATTGGCTT
GTTGTATTATAGGACTGTACAACTGTTGGGACCGTTAGTAGGACTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis