Browse Element(s) Details


OsAffx.23908.1.S1_at

Description tigr:9629.m06327
TID=OsAffx.23908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6392011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63940Os.55646.1.S1_at11/111+37445313..37447791Transcription initiation factor TFIID subunit A family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23908.1.S1_at--459--5611Chr01:37420243..37420267 (25 bp)
GACAAGGACCAAGACAACAGGACGA
LOC_Os01g63920
OsAffx.23908.1.S1_at--725--2491Chr01:37420258..37420282 (25 bp)
AACAGGACGAGAGTAGCCAGCGCCG
LOC_Os01g63920
OsAffx.23908.1.S1_at--1123--2151Chr01:37420292..37420316 (25 bp)
ACAGCGACCACCTTGAGGAGAGGGA
LOC_Os01g63920
OsAffx.23908.1.S1_at--893--5951Chr01:37420328..37420352 (25 bp)
GAGCAATAGCTGAGTTCCAACGTTT
LOC_Os01g63920
OsAffx.23908.1.S1_at--1120--1231Chr01:37420353..37420377 (25 bp)
AGTTGAATACACTTTCCGCTTGACG
LOC_Os01g63920
OsAffx.23908.1.S1_at--756--8931Chr01:37420373..37420397 (25 bp)
TGACGCACACACCTGAAGCCTTTGT
LOC_Os01g63920
OsAffx.23908.1.S1_at--705--4171Chr01:37420391..37420415 (25 bp)
CCTTTGTTCCGGTGGGCTGGACTGC
LOC_Os01g63920
OsAffx.23908.1.S1_at--852--4711Chr01:37420406..37420430 (25 bp)
GCTGGACTGCTGGACTAGATCGGCC
LOC_Os01g63920
OsAffx.23908.1.S1_at--173--10051Chr01:37420421..37420445 (25 bp)
TAGATCGGCCAGAATCTACGCCGCG
LOC_Os01g63920
OsAffx.23908.1.S1_at--898--7631Chr01:37420468..37420492 (25 bp)
GGGACCGATGCTCCGGTACGCACTA
LOC_Os01g63920
OsAffx.23908.1.S1_at--916--1991Chr01:37420489..37420513 (25 bp)
ACTAGCCCCTCGTGCAGGAAAAAGA
LOC_Os01g63920
Target Sequence 
GACAAGGACCAAGACAACAGGACGAGAGTAGCCAGCGCCGGTGACGGCGACAGCGACCACCTTGAGGAGAGGGAGCTTCG
AGAGAGAGCAATAGCTGAGTTCCAACGTTTAGTTGAATACACTTTCCGCTTGACGCACACACCTGAAGCCTTTGTTCCGG
TGGGCTGGACTGCTGGACTAGATCGGCCAGAATCTACGCCGCGCCTAGTGCCCGGTGATCCGATCGGGACCGATGCTCCG
GTACGCACTAGCCCCTCGTGCAGGAAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis