Browse Element(s) Details


Os.20081.1.S1_x_at

Description gb:NM_190678.1
DB_XREF= gi:34908439
GEN=P0683F02.11
TID=Os.20081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0683F02.11 (P0683F02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0683F02.11 (P0683F02.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6390010/11DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g204306/11DNA excision repair protein ERCC-8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20081.1.S1_x_at--708--2811Chr01:37403970..37403994 (25 bp)
AAGTTCGTGGTATCGATGGCCGTAT
LOC_Os01g63900
Os.20081.1.S1_x_at--703--872Chr02:12055309..12055333 (25 bp)
ATGGCCGTATGGTATCCTGTGGACA
LOC_Os02g20430
Os.20081.1.S1_x_at--998--6711Chr01:37404017..37404041 (25 bp)
GTTCGTGACAGCTTCTTTTGATCAG
LOC_Os01g63900
Os.20081.1.S1_x_at--671--1111Chr01:37404218..37404242 (25 bp)
AGTGTATAGCGCAGCAATGTCCCCA
LOC_Os01g63900
Os.20081.1.S1_x_at--353--2092Chr02:12055576..12055600 (25 bp)
ACATATGCTGATCGCTACTGGAAGT
LOC_Os02g20430
Os.20081.1.S1_x_at--1018--7291NONE
GTGCGGATGTTCAGGATCCTTTGAA
NONE
Os.20081.1.S1_x_at--1093--2532Chr02:12056322..12056346 (25 bp)
AACTCTTTACAACCTTCATCTTCTT
LOC_Os02g20430
Os.20081.1.S1_x_at--805--2112Chr02:12056373..12056696 (25 bp)
ACAGGCAAGAGTTCTGATTCTCGCT
LOC_Os02g20430
Os.20081.1.S1_x_at--1137--9992Chr02:12056781..12056805 (25 bp)
TAGCTGTCACTGAGGATCCATCACT
LOC_Os02g20430
Os.20081.1.S1_x_at--300--392Chr02:12056800..12056824 (25 bp)
ATCACTTGTATTCATCCCATGCATG
LOC_Os02g20430
Os.20081.1.S1_x_at--274--8991Chr01:37405643..37405667 (25 bp)
TGAACCTGTTAATTGCTGCTACTGT
LOC_Os01g63900
Target Sequence 
AAGTTCGTGGTATCGATGGCCGTATGGTATCCTGTGGACACTGGGCTGTTCGTGACAGCTTCTTTTGATCAGTATGTCAA
AGTGTGGGATACTAATTCGACTCAAGTCGTAATGGATTTTAAGATGCCTGGAAAAGTGTATAGCGCAGCAATGTCCCCAA
TTGCAACAACACATATGCTGATCGCTACTGGAAGTGCGGATGTTCAGGATCCTTTGAACTCTTTACAACCTTCATCTTCT
TCAAAGATTTACTCTGCACAGCAGAGGACAGGCAAGAGTTCTGATTCTCGCTTAAGACTTTGGGATATTGATTCAGGCTG
CAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAGCTGTCACTGAGGATCCATCAC
TTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACATTTCAAACATTCCGGGGGCAC
TATGAACCTGTTAATTGCTGCTACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20081.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis