Browse Element(s) Details


Os.46280.1.A1_at

Description gb:AK111811.1
DB_XREF= gi:37988474
TID=Os.46280.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46280 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122D09, full insert sequence.
FL= gb:AK111811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6390011/11DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g204306/11DNA excision repair protein ERCC-8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63920OsAffx.23908.1.S1_at11/111+37420192..37420557hypothetical protein
LOC_Os01g63930Os.17805.1.S2_at11/111+37423134..37425979Cytochrome P450 family protein, expressed
LOC_Os01g63930Os.17805.1.S1_at11/111+37423134..37425979Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46280.1.A1_at--616--7092Chr02:12056413..12056437 (25 bp)
GTCAAATCCCTGGACATGGACATAT
LOC_Os02g20430
Os.46280.1.A1_at--307--592Chr02:12056436..12056460 (25 bp)
ATCCAACAGAGATTGCACCCTGGTT
LOC_Os02g20430
Os.46280.1.A1_at--1074--3352Chr02:12056451..12056475 (25 bp)
CACCCTGGTTTGTCTTCTAGTCAAA
LOC_Os02g20430
Os.46280.1.A1_at--1100--6252Chr02:12056526..12056550 (25 bp)
GATGGGATGTACCTTCTTAGCTCAG
LOC_Os02g20430
Os.46280.1.A1_at--1141--3652Chr02:12056541..12056696 (25 bp)
CTTAGCTCAGGTTCTGATTCTCGCT
LOC_Os02g20430
Os.46280.1.A1_at--566--5132Chr02:12057109..12057133 (25 bp)
GCAAATTCTTGTGTGGTCTCCATCA
LOC_Os02g20430
Os.46280.1.A1_at--823--9211Chr01:37405809..37405833 (25 bp)
TCCATCAACTCCAGCGTTTACTGAA
LOC_Os01g63900
Os.46280.1.A1_at--979--7631Chr01:37406248..37406272 (25 bp)
GGGAGCCACGTTTATTACTACTGTA
LOC_Os01g63900
Os.46280.1.A1_at--396--8752Chr02:12057476..12057500 (25 bp)
TGTACAGTACTTCATCCTGCAGTTT
NONE
Os.46280.1.A1_at--16--9851Chr01:37406335..37406359 (25 bp)
TAAATATGCCAGATTCTCTCTCCGA
LOC_Os01g63900
Os.46280.1.A1_at--498--8972Chr02:12057570..12057597 (25 bp)
TGAAAATGCTCCTATGTGTTTACCC
NONE
Target Sequence 
GTCAAATCCCTGGACATGGACATATCCAACAGAGATTGCACCCTGGTTTGTCTTCTAGTCAAAATTGTGCAACGGCACAT
TATGGTGCTGTTACAGGATTAAGAACAACTACAGATGGGATGTACCTTCTTAGCTCAGGTTCTGATTCTCGCTTAAGACT
TTGGGATATTGATTCAGGCTGCAATACTTTGGTCAATTTTGAAGCTATGCGATTACAGACTAGCAAACCGCTACAATTAG
CTGTCACTGAGGATCCATCACTTGTATTCATCCCATGCATGGCAAGCATTAAGGCGTACAATTTATGGTCTGGTATGACA
TTTCAAACATTCCGGGGGCACTATGAACCTGTTAATTGCTGCTACTGTAGTGCACAAGAACAAGAGCTTTATACTGGCAG
CAATGACATGCAAATTCTTGTGTGGTCTCCATCAACTCCAGCGTTTACTGAAATGGGGAGCCACGTTTATTACTACTGTA
CAGTACTTCATCCTGCAGTTTCACCCGAAATATCACTTTGATAAAGACAGCTAAGTGAAATGTAAATATGCCAGATTCTC
TCTCCGATAATGAAAATGCTCCTATGTGTTTACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46280.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis