Browse Element(s) Details


Os.46440.1.A1_s_at

Description gb:CB627480
DB_XREF= gi:29622469
DB_XREF=OSIIEb02H14.r
CLONE=OSIIEb02H14
TID=Os.46440.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.46440 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564086.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2714011/11AT hook motif family protein
LOC_Os01g6391011/11AT hook motif family protein, expressed
LOC_Os02g204403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein
LOC_Os07g27150Os.16878.1.S1_at11/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27150OsAffx.8670.1.S1_at4/117+15749432..15754093Trafficking protein particle complex subunit 4, putative, expressed
LOC_Os07g27159NANA7+15754852..15755082NA
LOC_Os07g27170NANA7+15757867..15764117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27180Os.44098.1.S1_at11/117+15767049..15785663TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46440.1.A1_s_at--593--5552Chr07:15738326..15738350 (25 bp)
GAAACCTCCTTCAGCAAATCAGTCA
LOC_Os07g27140
Os.46440.1.A1_s_at--171--8772Chr07:15738289..15738313 (25 bp)
TGTTTGGGTTTTCTTGCAGTACTCT
LOC_Os07g27140
Os.46440.1.A1_s_at--353--5292Chr07:15738171..15738284 (25 bp)
GAATGGCTCGCTTGAAGTATGGGAA
LOC_Os07g27140
Os.46440.1.A1_s_at--183--7012Chr07:15738094..15738118 (25 bp)
GTACTGACCCTCGATTTTTAAAGCT
LOC_Os07g27140
Os.46440.1.A1_s_at--1026--5412Chr07:15738069..15738093 (25 bp)
GAAGCCTGTGTTTAGCTCTGCCAAA
LOC_Os07g27140
Os.46440.1.A1_s_at--601--8592Chr07:15737869..15737893 (25 bp)
TGGTCACCCTCTCATGATATGATAT
LOC_Os07g27140
Os.46440.1.A1_s_at--665--10233Chr07:15737847..15737871 (25 bp)
TATTGGCGGGATGTCACGATGGAAC
LOC_Os07g27140
Os.46440.1.A1_s_at--1067--8712Chr07:15737726..15737860 (25 bp)
TGTCACGATGGAACGGTTGCTTTAT
LOC_Os07g27140
Os.46440.1.A1_s_at--2--2373Chr07:15737478..15737502 (25 bp)
AAACCTTTTATGTGTGTAACTGCTG
LOC_Os07g27140
Os.46440.1.A1_s_at--337--7453Chr07:15737465..15737489 (25 bp)
GTGTAACTGCTGAATCTGCTCCCAT
LOC_Os07g27140
Os.46440.1.A1_s_at--149--9113Chr07:15737449..15737473 (25 bp)
TGCTCCCATCAGAACCGTGTCGTGG
LOC_Os07g27140
Target Sequence 
GAAACCTCCTTCAGCAAATCAGTCAACATAAATCATGTTTGGGTTTTCTTGCAGTACTCTTGGGGAATGGCTCGCTTGAA
GTATGGGAAGTTCCATCACCAAGCATGATTCAGAAAATATATTCCTCTTCTTCAAAGGAGGGTACTGACCCTCGATTTTT
AAAGCTGAAGCCTGTGTTTAGCTCTGCCAAAGTAAAGTGTGGGAACAAACAAAGTTGATTGGTCACCCTCTCATGATATG
ATATTGGCGGGATGTCACGATGGAACGGTTGCTTTATGGAAGTTCTCTGCAAACTTGTCATTTCAAGGTTCAAAACCTTT
TATGTGTGTAACTGCTGAATCTGCTCCCATCAGAACCGTGTCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46440.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis