Browse Element(s) Details


OsAffx.22351.1.S1_at

Description gb:NM_187162.1
DB_XREF= gi:34901409
TID=OsAffx.22351.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0075N02.11 (OSJNBa0075N02.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2710011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27070OsAffx.29376.1.S1_x_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27070Os.26442.1.S1_at1/117+15681407..15689367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g27080Os.46012.2.S1_x_at8/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.46012.3.S1_x_at6/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.27088.1.A1_x_at5/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27080Os.54691.1.S1_x_at1/117+15692648..15698346retrotransposon protein, putative, unclassified
LOC_Os07g27090OsAffx.21755.1.S1_x_at1/117+15703068..15703964hypothetical protein
LOC_Os07g27100OsAffx.22351.1.S1_at11/117+15711361..15711660hypothetical protein
LOC_Os07g27110Os.37197.1.S1_at11/117+15716642..15721424RNA recognition motif family protein, expressed
LOC_Os07g27120Os.8069.1.S1_at11/117+15724593..15728423expressed protein
LOC_Os07g27120Os.35374.1.S1_x_at10/117+15724593..15728423expressed protein
LOC_Os07g27130Os.45967.1.A1_at1/117+15728576..15729518hypothetical protein
LOC_Os07g27140Os.46440.1.A1_s_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.1.S1_a_at11/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.27347.3.S1_at10/117+15731085..15743951AT hook motif family protein
LOC_Os07g27140Os.36388.1.S1_at1/117+15731085..15743951AT hook motif family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22351.1.S1_at--345--72Chr07:15711659..15711682 (24 bp)
ATTGCTCCTCGCGATCGCTGACGAG
NONE
OsAffx.22351.1.S1_at--310--9331Chr07:15711572..15711596 (25 bp)
TCGCGATCGCTGACGAGTACGCCGC
LOC_Os07g27100
OsAffx.22351.1.S1_at--956--5771Chr07:15711498..15711522 (25 bp)
GACGAGGTTGCCGACGTGCTCTCGT
LOC_Os07g27100
OsAffx.22351.1.S1_at--1006--6151Chr07:15711495..15711519 (25 bp)
GAGGTTGCCGACGTGCTCTCGTCAC
LOC_Os07g27100
OsAffx.22351.1.S1_at--248--7591Chr07:15711465..15711489 (25 bp)
GGGCATCGCGAAGGCCTCGAGAGGA
LOC_Os07g27100
OsAffx.22351.1.S1_at--849--5311Chr07:15711442..15711466 (25 bp)
GAAGGTGAAGTTCATGACACCGCTC
LOC_Os07g27100
OsAffx.22351.1.S1_at--867--7351Chr07:15711438..15711462 (25 bp)
GTGAAGTTCATGACACCGCTCGTGC
LOC_Os07g27100
OsAffx.22351.1.S1_at--352--2831Chr07:15711435..15711459 (25 bp)
AAGTTCATGACACCGCTCGTGCGGG
LOC_Os07g27100
OsAffx.22351.1.S1_at--554--8951Chr07:15711428..15711452 (25 bp)
TGACACCGCTCGTGCGGGCCTGCAT
LOC_Os07g27100
OsAffx.22351.1.S1_at--89--9151Chr07:15711416..15711440 (25 bp)
TGCGGGCCTGCATGGCGACAGTCTC
LOC_Os07g27100
OsAffx.22351.1.S1_at--556--871Chr07:15711405..15711429 (25 bp)
ATGGCGACAGTCTCCGGCAGCGGCA
LOC_Os07g27100
Target Sequence 
ATTGCTCCTCGCGATCGCTGACGAGTACGCCGCCGCCTGCACCACTGTCGACTCGACGGGGACGGTCAACGTGCCCACCG
CCGACGAGGTTGCCGACGTGCTCTCGTCACCCGGCGGGCATCGCGAAGGCCTCGAGAGGAAGGTGAAGTTCATGACACCG
CTCGTGCGGGCCTGCATGGCGACAGTCTCCGGCAGCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis