Browse Element(s) Details


Os.45967.1.A1_at

Description gb:NM_187165.1
DB_XREF= gi:34901415
GEN=OSJNBa0075N02.14
TID=Os.45967.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0075N02.14 (OSJNBa0075N02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0075N02.14 (OSJNBa0075N02.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g349902/11ACT domain containing protein, expressed
LOC_Os03g075001/11hypothetical protein
LOC_Os03g130201/11hypothetical protein
LOC_Os07g271301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45967.1.A1_at--566--1091NONE
AGTGTCCTGAGGTGGGCGCTGTACC
NONE
Os.45967.1.A1_at--1098--7551NONE
GGGCGCTGTACCGAAGCACGTCCAG
NONE
Os.45967.1.A1_at--270--4074Chr07:15729145..15729169 (25 bp)
CGAAGCACGTCCAGGCTCGGTTTGG
LOC_Os07g27130
Os.45967.1.A1_at--145--4551NONE
GCCCATACCGCCATGCGGAGAGGCG
NONE
Os.45967.1.A1_at--652--4714Chr07:15729551..15729575 (25 bp)
GCTGGCCGAGCAAGTATGCTCAGTT
NONE
Os.45967.1.A1_at--512--4831NONE
GCTCAGTTCATAGATCTTGGCATTC
NONE
Os.45967.1.A1_at--1005--1211NONE
AGTTCATAGATCTTGGCATTCAGGT
NONE
Os.45967.1.A1_at--466--4951NONE
GCATTCAGGTGTATATGTTCTGCAA
NONE
Os.45967.1.A1_at--267--10471NONE
TTACGAAGAGTAGGACGCAAACATC
NONE
Os.45967.1.A1_at--1113--1811NONE
ACGCAAACATCCTCGTTATATTAGA
NONE
Os.45967.1.A1_at--886--10191NONE
TATATTAGATCATCTGTCACCCGAT
NONE
Target Sequence 
AGTGTCCTGAGGTGGGCGCTGTACCGAAGCACGTCCAGGCTCGGTTTGGGGCGCCCATACCGCCATGCGGAGAGGCGCCN
TCGTCGACTCTCCTCTCCTCGGGCCCAATGTTGGTGCAGGGCTCNGGCAAGGTGCTGCCATNCCCGNCNTTCACCTCGAC
TCTGGGAGACTGCAACNGCNNCCTTCCGGCTTCCGCCTCCACAACGTCAGGAATCTGCCGTTGCAGTTCACCTCAACTCA
CCTCGAAGGCTCTCGAATCTNNNNNGGACGCCGCCGCTTTNTGCCTTCACGCCGGGAGNTNNNAGCCGCTATCCACGTTC
TGGTTGAGTCATGCTGGAACAATAACCCACTCNTGCCGGCTTGTNTTGCGTCGTCTGTCCGCCCCTCTTGGTTCCTAACA
GCAAGNNCAGGNATCGCCTCACTCCAGGTGGCTGGCCGAGCAAGTATGCTCAGTTCATAGATCTTGGCATTCAGGTGTAT
ATGTTCTGCAATAGAAAGTTTACAAAGAATGCAAAATTACGAAGAGTAGGACGCAAACATCCTCGTTATATTAGATCATC
TGTCACCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45967.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis