Browse Element(s) Details


Os.47735.1.S1_at

Description gb:AK108454.1
DB_XREF= gi:32993663
TID=Os.47735.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C12, full insert sequence.
FL= gb:AK108454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3497011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009825biological_processmultidimensional cell growth
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47735.1.S1_at--605--4991Chr02:20967647..20967667 (21 bp)
GCATGGAGTCCAACAACTGGGTGCT
LOC_Os02g34970
Os.47735.1.S1_at--645--6692Chr02:20967677..20967701 (25 bp)
GTTCGAATCGAGCTGCGGTTCACAA
LOC_Os02g34970
Os.47735.1.S1_at--199--7611Chr02:20967719..20967743 (25 bp)
GGGCACCGAGCTTTCATGCTTAGAT
LOC_Os02g34970
Os.47735.1.S1_at--1064--5391Chr02:20967805..20967829 (25 bp)
GAACCTAGCTAAGTCAGTACTCGTT
LOC_Os02g34970
Os.47735.1.S1_at--715--7791Chr02:20967843..20967867 (25 bp)
GGTCCTATGCCTATCAAACCATTTG
LOC_Os02g34970
Os.47735.1.S1_at--578--3571Chr02:20967862..20967886 (25 bp)
CATTTGATTAGCTATGGCCGGGTTA
LOC_Os02g34970
Os.47735.1.S1_at--272--7651Chr02:20967939..20967963 (25 bp)
GGGAGGCATTGAACCCAATCCAGTC
LOC_Os02g34970
Os.47735.1.S1_at--793--2591Chr02:20968000..20968024 (25 bp)
AACGAGTATGTTGGGCTTGTGTCAG
LOC_Os02g34970
Os.47735.1.S1_at--843--9391Chr02:20968083..20968107 (25 bp)
TCGTTTCTCGCATATGGTGGTCTAC
LOC_Os02g34970
Os.47735.1.S1_at--902--7731Chr02:20968098..20968122 (25 bp)
GGTGGTCTACTTTGGCTCATGAAGC
LOC_Os02g34970
Os.47735.1.S1_at--942--3511Chr02:20968148..20968172 (25 bp)
CATGCACTTCATGCAGCTTGTGGTA
LOC_Os02g34970
Target Sequence 
GCATGGAGTCCAACAACTGGGTGCTGTGCCGAGTGTTCGAATCGAGCTGCGGTTCACAAGTGAGCTTCCACGGTGGGGGC
ACCGAGCTTTCATGCTTAGATGAGGTGTTTTTGTCACTAGATGACTACGATGAAGTAAGTTTGCCGAATAAATAGAAATA
TAGAACCTAGCTAAGTCAGTACTCGTTAGAGCTGACAGTAGGTCCTATGCCTATCAAACCATTTGATTAGCTATGGCCGG
GTTATGTTGATGATATCTATACATAATCTGTTGCATTATGAATAATTAAATGGTCTGGGAGGCATTGAACCCAATCCAGT
CCATCCTAGATAATTACCATGTAATTAGTTATCCCCCAACGAGTATGTTGGGCTTGTGTCAGACAACTGTGGCATATGTG
TGAAGCACAAGTCGCTTCTAAAAAGATGAGTTTTTTTTTTTCTCGTTTCTCGCATATGGTGGTCTACTTTGGCTCATGAA
GCATTCAAAATTTTAATATAATCAAAGCATGCACTTCATGCAGCTTGTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47735.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis