Browse Element(s) Details


Os.53357.1.S1_at

Description gb:AK072252.1
DB_XREF= gi:32982275
TID=Os.53357.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008H21, full insert sequence.
FL= gb:AK072252.1 gb:AK073161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3494011/11Protein disulfide-isomerase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53357.1.S1_at--858--6011Chr02:20952784..20952808 (25 bp)
GAGAGGTGGTTTTCAACTCCGGCAA
LOC_Os02g34940
Os.53357.1.S1_at--130--2391Chr02:20952330..20952350 (21 bp)
AAACGTTCTGCTCGAGTTCTATGCT
LOC_Os02g34940
Os.53357.1.S1_at--423--8531Chr02:20952297..20952321 (25 bp)
TGGACATTGTCAGAAGCTGGCCCCG
LOC_Os02g34940
Os.53357.1.S1_at--913--1611Chr02:20952283..20952307 (25 bp)
AGCTGGCCCCGATCTTGGAAGAGGT
LOC_Os02g34940
Os.53357.1.S1_at--468--9911Chr02:20951880..20951904 (25 bp)
TACTGCCAACGATGTACCGTCAGAT
LOC_Os02g34940
Os.53357.1.S1_at--224--8131Chr02:20951785..20951809 (25 bp)
GGACAGCCGAGGAGATCATCGATTT
LOC_Os02g34940
Os.53357.1.S1_at--413--7611Chr02:20951731..20951755 (25 bp)
GGGAAGCAACCACGACTGAATCTGT
LOC_Os02g34940
Os.53357.1.S1_at--872--3611Chr02:20951476..20951500 (25 bp)
CTTGTATTCGAGTTCCAGGTTTCCA
LOC_Os02g34940
Os.53357.1.S1_at--1120--4331Chr02:20951462..20951486 (25 bp)
CCAGGTTTCCAAGTACATGTAGCAT
LOC_Os02g34940
Os.53357.1.S1_at--840--10271Chr02:20951395..20951419 (25 bp)
TTTGCACCGCTGAAATCTGTTATTG
LOC_Os02g34940
Os.53357.1.S1_at--529--5231Chr02:20951350..20951374 (25 bp)
GAATAATCCCCATTTTAGCTTGCCA
LOC_Os02g34940
Target Sequence 
GAGAGGTGGTTTTCAACTCCGGCAAAAACGTTCTGCTCGAGTTCTATGCTCCATGGTGTGGACATTGTCAGAAGCTGGCC
CCGATCTTGGAAGAGGTTGCAGTTTCATTGAAAGATGATGAAGACGTCGTCATAGCAAAGATGGATGGTACTGCCAACGA
TGTACCGTCAGATTTCGCGGTGGAGGGGTACCCAAGCATGTACTTCTACTCGTCTGGGGGGAACCTCCTGCCCTACGACG
GGAGGACAGCCGAGGAGATCATCGATTTCATCACCAAGAACAAGGGCTCCAGGCCTGGGGAAGCAACCACGACTGAATCT
GTCAAGGATGAACTGTGATGGCCACTTGGGGGAGTGGGGAGCTTCAGGTTAGGAGGTGCAGTGCAGCTGACAGCTTGAGG
ACATAGCTCAGTACTGAATTTAATCTTGTATTCGAGTTCCAGGTTTCCAAGTACATGTAGCATTACCAATGGTTTCATAC
ATACATGTCCCCCCCCTTTTTTTTTTTTTTTTGCACCGCTGAAATCTGTTATTGTAACATCATTACACTACATCGAATAA
TCCCCATTTTAGCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis