Browse Element(s) Details


OsAffx.2862.1.S1_at

Description tigr:9630.m03327
TID=OsAffx.2862.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3491011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2862.1.S1_at--1105--4511Chr02:20942127..20942151 (25 bp)
GCCGCTACGGCGAAGGTGACCATGA
LOC_Os02g34910
OsAffx.2862.1.S1_at--779--8931Chr02:20942105..20942129 (25 bp)
TGACGACAGTGGTGAAGGCGGCTAT
LOC_Os02g34910
OsAffx.2862.1.S1_at--1045--2611Chr02:20942071..20942095 (25 bp)
AACCGCGTCTATGGCGTCTGTGGCG
LOC_Os02g34910
OsAffx.2862.1.S1_at--626--2631Chr02:20942013..20942034 (22 bp)
AACCTCGTCCCTTGCTGCCATGTGA
LOC_Os02g34910
OsAffx.2862.1.S1_at--1086--9091Chr02:20941777..20942022 (25 bp)
TGCTGCCATGTGAAGACGATGAAGC
LOC_Os02g34910
OsAffx.2862.1.S1_at--845--5771Chr02:20941763..20941787 (25 bp)
GACGATGAAGCGTTGCTCCCTACTA
LOC_Os02g34910
OsAffx.2862.1.S1_at--702--4051Chr02:20941706..20941730 (25 bp)
CGATGAGATGGGTGCTGCTAGATCC
LOC_Os02g34910
OsAffx.2862.1.S1_at--460--811Chr02:20941699..20941723 (25 bp)
ATGGGTGCTGCTAGATCCAGCAAGC
LOC_Os02g34910
OsAffx.2862.1.S1_at--53--591Chr02:20941685..20941709 (25 bp)
ATCCAGCAAGCAGCAGGTCGGCAGA
LOC_Os02g34910
OsAffx.2862.1.S1_at--74--5351Chr02:20941633..20941657 (25 bp)
GAAGAGGACACCATAAACTCCAAAT
LOC_Os02g34910
OsAffx.2862.1.S1_at--20--1991Chr02:20941617..20941641 (25 bp)
ACTCCAAATCAACGCGACAGAGGCT
LOC_Os02g34910
Target Sequence 
GCCGCTACGGCGAAGGTGACCATGACGACAGTGGTGAAGGCGGCTATGGTGGGGGCAACCGCGTCTATGGCGTCTGTGGC
GTGGGAGGTGGCCACAGGTGCCGTGCCGCCACCGCCGAACCTCGTCCCTTGCTGCCATGTGAAGACGATGAAGCGTTGCT
CCCTACTACCCATCTCCGTTCTCCCCCGCAGCGGTGAAGACGATGAGATGGGTGCTGCTAGATCCAGCAAGCAGCAGGTC
GGCAGAGAGGAGAAGGATGGTGCCGGAGAGGATGAAGAGGACACCATAAACTCCAAATCAACGCGACAGAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis