Browse Element(s) Details


OsAffx.2863.1.S1_at

Description tigr:9630.m03328
TID=OsAffx.2863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3492010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34884Os.10376.1.S1_at11/112+20915571..20926938SacI homology domain containing protein, expressed
LOC_Os02g34900OsAffx.20366.1.S1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34900Os.20851.1.A1_x_at1/112+20932291..20940364transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g34910OsAffx.2862.1.S1_at11/112+20941586..20942223hypothetical protein
LOC_Os02g34920OsAffx.2863.1.S1_at10/112+20943949..20946184hypothetical protein
LOC_Os02g34920Os.26886.3.S1_x_at2/112+20943949..20946184hypothetical protein
LOC_Os02g34930OsAffx.12354.1.S1_x_at11/112+20949450..20950151hypothetical protein
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2863.1.S1_at--1092--5631NONE
GACAGAAGTGGGTGGATCCGCCAAA
NONE
OsAffx.2863.1.S1_at--1037--6371Chr02:20945581..20945605 (25 bp)
GATCCGCCAAAGGAGCTAGAGCTGA
LOC_Os02g34920
OsAffx.2863.1.S1_at--749--2311Chr02:20945589..20945613 (25 bp)
AAAGGAGCTAGAGCTGATGTTGCCA
LOC_Os02g34920
OsAffx.2863.1.S1_at--404--991Chr02:20945623..20945647 (25 bp)
AGGAGGTTGATCATCTGTTGGCAAA
LOC_Os02g34920
OsAffx.2863.1.S1_at--1061--1311Chr02:20945672..20945696 (25 bp)
AGATGGCAAGATAGCTAGTATTATT
LOC_Os02g34920
OsAffx.2863.1.S1_at--490--3711Chr02:20945710..20945734 (25 bp)
CTAGAATTAGAGATGAAGCTGGCGA
LOC_Os02g34920
OsAffx.2863.1.S1_at--478--1111Chr02:20946037..20946061 (25 bp)
AGTGAGTATACGCAAACATCCTTTT
LOC_Os02g34920
OsAffx.2863.1.S1_at--258--2511Chr02:20946051..20946075 (25 bp)
AACATCCTTTTGATAGGGAGCACCT
LOC_Os02g34920
OsAffx.2863.1.S1_at--552--1071Chr02:20946065..20946089 (25 bp)
AGGGAGCACCTCGACAAGATCAGAA
LOC_Os02g34920
OsAffx.2863.1.S1_at--939--5271Chr02:20946094..20946118 (25 bp)
GAATGTGATGACCATACTTGTCACC
LOC_Os02g34920
OsAffx.2863.1.S1_at--435--691Chr02:20946101..20946125 (25 bp)
ATGACCATACTTGTCACCGTTGCAT
LOC_Os02g34920
Target Sequence 
GACAGAAGTGGGTGGATCCGCCAAAGGAGCTAGAGCTGATGTTGCCAGGAAGACGAAGGAGGTTGATCATCTGTTGGCAA
AATTAGAAAATAAGGGAGTGGAGATAGATGGCAAGATAGCTAGTATTATTGATGATGGGATAGCTAGAATTAGAGATGAA
GCTGGCGAGGAAGGAGTGAGTATACGCAAACATCCTTTTGATAGGGAGCACCTCGACAAGATCAGAAAAGAGAATGTGAT
GACCATACTTGTCACCGTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis