Browse Element(s) Details


OsAffx.24581.1.S1_x_at

Description tigr:9630.m03335
TID=OsAffx.24581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to uridylyl transferases
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3499010/11ACT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34940Os.53357.1.S1_at11/112+20951339..20956089Protein disulfide-isomerase precursor, putative, expressed
LOC_Os02g34950Os.5253.1.S1_at8/112+20957948..20960810ATP-binding family protein, putative, expressed
LOC_Os02g34960OsAffx.2864.1.S1_at11/112+20960969..20962759pentatricopeptide, putative
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005829cellular_componentcytosol
GO:0016597molecular_functionamino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24581.1.S1_x_at--457--1891Chr02:20986597..20986621 (25 bp)
ACGTCAAGTGCAGGGACAGGTCCAA
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--458--1031Chr02:20986614..20986638 (25 bp)
AGGTCCAAGCTGCTGTTCGACATCG
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--466--4971Chr02:20986696..20986925 (25 bp)
GCATCTACGGCATCCAGGAGCTGTA
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--184--4351Chr02:20986915..20986938 (24 bp)
CCAGGAGCTGTACATTCGTCGGAAG
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--1138--791Chr02:20986940..20986964 (25 bp)
ATGGGCGCACGCTACAGAAGGACGA
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--362--371Chr02:20986978..20987002 (25 bp)
ATCAAGTGCCTTGAAGCGGCCATCT
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--581--5411Chr02:20986990..20987014 (25 bp)
GAAGCGGCCATCTCCAGAAGAGTAT
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--498--5351NONE
GAAGAGTATCTGAGGGATTCACCCT
NONE
OsAffx.24581.1.S1_x_at--23--6571Chr02:20987628..20987652 (25 bp)
GATTCACCCTGGAGCTGTGCGGCAG
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--193--5671Chr02:20987792..20987816 (25 bp)
GACATGAAGACCATCGAGGGCCTCC
LOC_Os02g34990
OsAffx.24581.1.S1_x_at--138--3751Chr02:20987843..20987867 (25 bp)
CTCAACGTCAAGAAGGTGCCCTCCT
LOC_Os02g34990
Target Sequence 
ACGTCAAGTGCAGGGACAGGTCCAAGCTGCTGTTCGACATCGTGTGCACGCTCACCGACATGCACTACGTCGTCTCCCAC
GCCTCCGTCTCCTCCGACGGCATCTACGGCATCCAGGAGCTGTACATTCGTCGGAAGGATGGGCGCACGCTACAGAAGGA
CGAAGCAGGGAGGGTGATCAAGTGCCTTGAAGCGGCCATCTCCAGAAGAGTATCTGAGGGATTCACCCTGGAGCTGTGCG
GCAGGGACAGGGTCGGGCTGCTGTCCGACGTGACGCGGGTGCTCAGGGAGCACGGCCTGACGGTGACGAGGGCCGACGTC
ACGACGGTCGGCGGCCAGGCCATCAACGTCTTCTACGTCCGCGACGCCTCCGGCGAGCCGGTGGACATGAAGACCATCGA
GGGCCTCCGCGTCCAGGTCGGCCACACCGTCATGCTCAACGTCAAGAAGGTGCCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24581.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis