Browse Element(s) Details


Os.30962.1.S1_at

Description gb:AK108057.1
DB_XREF= gi:32993266
TID=Os.30962.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.30962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A01, full insert sequence.
FL= gb:AK108057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3500011/11Chaperone protein dnaJ 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34970Os.47735.1.S1_at11/112+20966957..20968222No apical meristem protein, expressed
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30962.1.S1_at--668--8011Chr02:20989092..20989116 (25 bp)
GGAGGCATTGCCAGGACCATCAAAA
LOC_Os02g35000
Os.30962.1.S1_at--242--2371Chr02:20989070..20989094 (25 bp)
AAACCGACCATTCTCGATGATGACA
LOC_Os02g35000
Os.30962.1.S1_at--339--7531Chr02:20989016..20989040 (25 bp)
GTGGCTCGGACAGTGCCTTATCGGA
LOC_Os02g35000
Os.30962.1.S1_at--788--10411Chr02:20988999..20989023 (25 bp)
TTATCGGACTCCTGCAGTTACTCAG
LOC_Os02g35000
Os.30962.1.S1_at--843--10211Chr02:20988868..20988892 (25 bp)
TATTCAGATGCTTATGCAACCCAGC
LOC_Os02g35000
Os.30962.1.S1_at--204--2791Chr02:20988774..20988798 (25 bp)
AAGAGATCCCTGAATCTTTCCAGAT
LOC_Os02g35000
Os.30962.1.S1_at--73--7671Chr02:20988729..20988753 (25 bp)
GGGATCATGCATCACCATAATTTGT
LOC_Os02g35000
Os.30962.1.S1_at--183--10811Chr02:20988693..20988717 (25 bp)
TTGTAGATTCTACTGCAGCACTGGT
LOC_Os02g35000
Os.30962.1.S1_at--864--3331Chr02:20988675..20988699 (25 bp)
CACTGGTGATCAGGCCATTAGCTCA
LOC_Os02g35000
Os.30962.1.S1_at--120--2451Chr02:20988651..20988675 (25 bp)
AAAATCGTTCTTTTTCTGTCCATGA
LOC_Os02g35000
Os.30962.1.S1_at--997--8191Chr02:20988514..20988538 (25 bp)
GGAAGTCCATTTCTCTCTGATTTTA
LOC_Os02g35000
Target Sequence 
GGAGGCATTGCCAGGACCATCAAAACCGACCATTCTCGATGATGACAGCAGCTCTGATGAAAGTTCAGATGACGACGTGG
CTCGGACAGTGCCTTATCGGACTCCTGCAGTTACTCAGGGAATTGGCAGGTTATTCAGATGCTTATGCAACCCAGCATAT
GATGTTGACGATGACTTTGAACCACGCAAATGAGTGGTAAAGTAGCAGAGAGGTTGCAACTATTTAAGAGATCCCTGAAT
CTTTCCAGATTATGTGCTTCTGAACAGTTGGGGATCATGCATCACCATAATTTGTCTGGNTGTGCATTGTAGATTCTACT
GCAGCACTGGTGATCAGGCCATTAGCTCAAAATCGTTCTTTTTCTGTCCATGAACAGTAGATTCTTTCTTNGTTTTTGAT
ATAGATTTTATCGAATTGTGTGGTGTTTATGTAATTGTTTGGTTTGGGAGTTGTCAAAAGAAAGAAAGCAAGAACAAGTG
TAACTGGAAGTCCATTTCTCTCTGATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis