Browse Element(s) Details


OsAffx.12356.1.S1_at

Description tigr:9630.m03337
TID=OsAffx.12356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to mitogen-activated protein kinases
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3501011/11mitogen-activated kinase kinase kinase alpha, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34980OsAffx.12355.1.S1_at11/112+20975490..20975744hypothetical protein
LOC_Os02g34990Os.53355.1.S1_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.53355.1.S1_s_at11/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990OsAffx.24581.1.S1_x_at10/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g34990Os.45967.1.A1_at2/112+20980107..20988356ACT domain containing protein, expressed
LOC_Os02g35000Os.30962.1.S1_at11/112+20988470..20991249Chaperone protein dnaJ 10, putative, expressed
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12356.1.S1_at--257--1631Chr02:20997537..20997561 (25 bp)
AGCGTGATCCAGTACAGAGGCCTTC
LOC_Os02g35010
OsAffx.12356.1.S1_at--87--1331Chr02:20997522..20997546 (25 bp)
AGAGGCCTTCTGCAGCTTCGTTGCT
LOC_Os02g35010
OsAffx.12356.1.S1_at--607--9131Chr02:20997501..20997525 (25 bp)
TGCTGGGTCACCCTTTTGTCCATGA
LOC_Os02g35010
OsAffx.12356.1.S1_at--257--10251Chr02:20997487..20997511 (25 bp)
TTTGTCCATGACCATCAGGCTGTAA
LOC_Os02g35010
OsAffx.12356.1.S1_at--1057--5971Chr02:20997434..20997458 (25 bp)
GAGAAATGGAATTTCTTCCCCTGCA
LOC_Os02g35010
OsAffx.12356.1.S1_at--1140--10551Chr02:20997422..20997446 (25 bp)
TTCTTCCCCTGCAGCAAGTCATAGA
LOC_Os02g35010
OsAffx.12356.1.S1_at--44--5551Chr02:20997034..20997058 (25 bp)
GAAACATTGCTCCTCTGCATGGTAT
LOC_Os02g35010
OsAffx.12356.1.S1_at--1129--8211Chr02:20996991..20997015 (25 bp)
GGAATTCGCTGGATTTTCCACAGCC
LOC_Os02g35010
OsAffx.12356.1.S1_at--984--5131Chr02:20996839..20996863 (25 bp)
GCAAACATGTCTTTACCGGTGTCGC
LOC_Os02g35010
OsAffx.12356.1.S1_at--911--4211Chr02:20996803..20996827 (25 bp)
CCGCTGCGGCAGTTCAAGCAATCAA
LOC_Os02g35010
OsAffx.12356.1.S1_at--1035--2211Chr02:20996709..20996733 (25 bp)
ACAATCCCTTGCAGAACCAGTCGAG
LOC_Os02g35010
Target Sequence 
AGCGTGATCCAGTACAGAGGCCTTCTGCAGCTTCGTTGCTGGGTCACCCTTTTGTCCATGACCATCAGGCTGTAAGAGCA
CCAACATGCAATGGTACTCAGTTGAGAAATGGAATTTCTTCCCCTGCAGCAAGTCATAGAAAGCCAAACAGAGAATCCTC
GTCAAGGAGAAACATTGCTCCTCTGCATGGTATCGCAGGACTAAGCGCAAGGGAATTCGCTGGATTTTCCACAGCCTATC
CTTCTCCTCACAATACCTCCAGCAGCCCAACTGCAGTGAGAGCAAACATGTCTTTACCGGTGTCGCCATGCTCAAGCCCG
CTGCGGCAGTTCAAGCAATCAAACTGGAGCTGCCTCCCTTCACCAACGCATCCGGCGCTCTCCCCTGGATTATCAGCAGC
AGCCTACCCAAACAATCCCTTGCAGAACCAGTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis