Browse Element(s) Details


Os.57570.1.S1_at

Description gb:AK102370.1
DB_XREF= gi:32987579
TID=Os.57570.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091L01, full insert sequence.
FL= gb:AK102370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2280011/11Tubby protein, putative, expressed
LOC_Os02g350391/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22820Os.55682.1.S1_at11/113+13168311..13169148expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0008081molecular_functionphosphoric diester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57570.1.S1_at--958--10091Chr03:13143973..13143997 (25 bp)
TAGGCTGACGAGTTGCCAATGGAAC
LOC_Os03g22800
Os.57570.1.S1_at--1047--832Chr02:21032304..21032341 (24 bp)
ATGGAACTCGCAAAAATACCTCTTA
LOC_Os02g35039
Os.57570.1.S1_at--368--311Chr03:13143940..13143964 (25 bp)
ATACCTCTTAAGCTGCAGTTGCGCA
LOC_Os03g22800
Os.57570.1.S1_at--651--1231Chr03:13143924..13143948 (25 bp)
AGTTGCGCAGTTGTTTTCCATCACT
LOC_Os03g22800
Os.57570.1.S1_at--288--10671Chr03:13143909..13143933 (25 bp)
TTCCATCACTGTCCAGGCATAGCTG
LOC_Os03g22800
Os.57570.1.S1_at--519--7271Chr03:13143899..13143923 (25 bp)
GTCCAGGCATAGCTGCATTCATGCA
LOC_Os03g22800
Os.57570.1.S1_at--103--9071Chr03:13143886..13143910 (25 bp)
TGCATTCATGCAGCTAAATCACAAT
LOC_Os03g22800
Os.57570.1.S1_at--239--2271Chr03:13143871..13143895 (25 bp)
AAATCACAATCAGATGAACCGCATC
LOC_Os03g22800
Os.57570.1.S1_at--913--6311Chr03:13143859..13143883 (25 bp)
GATGAACCGCATCCTAATCAAGATT
LOC_Os03g22800
Os.57570.1.S1_at--431--10411Chr03:13143835..13143859 (25 bp)
TTTTGGCCGCGAATGCAATGTACCT
LOC_Os03g22800
Os.57570.1.S1_at--742--4111Chr03:13143826..13143850 (25 bp)
CGAATGCAATGTACCTGCAGGTGCT
LOC_Os03g22800
Target Sequence 
TAGGCTGACGAGTTGCCAATGGAACTCGCAAAAATACCTCTTAAGCTGCAGTTGCGCAGTTGTTTTCCATCACTGTCCAG
GCATAGCTGCATTCATGCAGCTAAATCACAATCAGATGAACCGCATCCTAATCAAGATTTTTGGCCGCGAATGCAATGTA
CCTGCAGGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis