Browse Element(s) Details


OsAffx.3299.1.S1_at

Description tigr:9631.m02272
TID=OsAffx.3299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2275011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3299.1.S1_at--585--5851Chr03:13120140..13120164 (25 bp)
GACCAGCTCGTGGAGAGACACCCGT
LOC_Os03g22750
OsAffx.3299.1.S1_at--295--6011Chr03:13120152..13120176 (25 bp)
GAGAGACACCCGTGCTCTCACCTGG
LOC_Os03g22750
OsAffx.3299.1.S1_at--788--4091Chr03:13120352..13120376 (25 bp)
CGACGTGCTGATGTTCGAGCTGGAC
LOC_Os03g22750
OsAffx.3299.1.S1_at--129--2311Chr03:13120395..13120419 (25 bp)
AAAGGCGGAGCGATGTCGACGCTCA
LOC_Os03g22750
OsAffx.3299.1.S1_at--497--8091Chr03:13120401..13120425 (25 bp)
GGAGCGATGTCGACGCTCAAGCTGT
LOC_Os03g22750
OsAffx.3299.1.S1_at--22--1111Chr03:13120477..13120501 (25 bp)
AGTGGGCACCTGTCTGGGAATGCAA
LOC_Os03g22750
OsAffx.3299.1.S1_at--139--311Chr03:13120504..13120528 (25 bp)
ATAGCTGCATGTTACCAGTCTCTAC
LOC_Os03g22750
OsAffx.3299.1.S1_at--494--731Chr03:13120512..13120536 (25 bp)
ATGTTACCAGTCTCTACGCCGGCGA
LOC_Os03g22750
OsAffx.3299.1.S1_at--156--8371Chr03:13120683..13120707 (25 bp)
GGCGGGTTATTGCAGGTGGCGTTCA
LOC_Os03g22750
OsAffx.3299.1.S1_at--385--4591Chr03:13120722..13120746 (25 bp)
GCGCACGCCTTCTTCAAGATGCATC
LOC_Os03g22750
OsAffx.3299.1.S1_at--41--1831Chr03:13120726..13120750 (25 bp)
ACGCCTTCTTCAAGATGCATCCGTC
LOC_Os03g22750
Target Sequence 
GACCAGCTCGTGGAGAGACACCCGTGCTCTCACCTGGGCCACAGGCCGGCAGACACCCGCACCTAAACCCCTACGCCCCC
GCGAAGCTCGTGGCGTTCGACACGGTGTCCGAGGCGTTCCGGCTGGTGGCGCCGTCGCCGGAGACGGCGGCGAACAACGG
CGACGACGACGACGTGCTGATGTTCGAGCTGGACGGGGCACTCGCGGTGCTGAAAGGCGGAGCGATGTCGACGCTCAAGC
TGTGGGTGCTCGACGATGACGTCGGCGGCGGCGGCGGCGGCGACGCCGGCGAGCAGTGGGCACCTGTCTGGGAATGCAAA
TATAGCTGCATGTTACCAGTCTCTACGCCGGCGAGCGTGGCCGTGTGGGATGACGACGGCGGCGGCGGCGGCGACGCCGG
CGGCGCCACGTTCACCCGGCGTCGCATCACGCTGTACGGCGTGGATGAGACGGCGGCGAGGGGGAGGGCGCTCCACGTGT
TCGCGTGCGGCGCGCGCAACGGCGGGTTATTGCAGGTGGCGTTCAGGGAGAACACGGTGGCGCACGCCTTCTTCAAGATG
CATCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis