Browse Element(s) Details


Os.10709.1.S1_at

Description gb:AK058397.1
DB_XREF= gi:32968415
TID=Os.10709.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10709 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-B01, full insert sequence.
FL= gb:AK106288.1 gb:AK105630.1 gb:AK058397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2272011/11expressed protein
LOC_Os06g445502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10709.1.S1_at--334--3952Chr06:26910228..26910252 (25 bp)
CGGTTCAAAAGCTCTCATACATTGT
LOC_Os06g44550
Os.10709.1.S1_at--1019--7212Chr06:26910279..26910303 (25 bp)
GTCCGCTTTGTTTCTCGTGGTGGGT
LOC_Os06g44550
Os.10709.1.S1_at--337--10875Chr06:26910464..26910488 (25 bp)
TTGGATGTCGGAGCTGCTTTTTGCT
NONE
Os.10709.1.S1_at--68--773Chr06:26910468..26910492 (25 bp)
ATGTCGGAGCTGCTTTTTGCTTTGG
NONE
Os.10709.1.S1_at--1039--10392Chr06:26910482..26910506 (25 bp)
TTTTGCTTTGGCGACTTTCATGGCT
NONE
Os.10709.1.S1_at--598--8812Chr06:26910488..26910512 (25 bp)
TTTGGCGACTTTCATGGCTTTAGTG
NONE
Os.10709.1.S1_at--1073--6752Chr06:26910614..26910638 (25 bp)
GTTTAGCTTGGCGACGACGTCCTGC
NONE
Os.10709.1.S1_at--610--10012Chr06:26910617..26910641 (25 bp)
TAGCTTGGCGACGACGTCCTGCATT
NONE
Os.10709.1.S1_at--34--8651Chr03:13101652..13101676 (25 bp)
TGGGCTCCGCCATCATGGTTAGTAG
LOC_Os03g22720
Os.10709.1.S1_at--156--4331Chr03:13101643..13101667 (25 bp)
CCATCATGGTTAGTAGTGTAGCGGT
LOC_Os03g22720
Os.10709.1.S1_at--51--10671Chr03:13101603..13101627 (25 bp)
TTCCTGTAATTAACCATGCGGATGT
LOC_Os03g22720
Target Sequence 
CGGTTCAAAAGCTCTCATACATTGTGTTCGGCGAGGCCTTCGCCTTCTTGGGTCCGCTTTGTTTCTCGTGGTGGGTGTCA
CGCTCTTTGGTTGTTTCTNCNGATGAAGTCNGAGCTNCTCNCTGATGGGGTGCGGNGACGCCTNGCAACGATGACATGTT
GCAGTCTCTTCCTAGGAGTTGTGGTGCTGGCCGTGTNAAGGAAGTGGCTCCTCGGTGGCTTGGCTGATGTCCATTGTTGG
ATGTCGGAGCTGCTTTTTGCTTTGGCGACTTTCATGGCTTTAGTGTCGCTGTGGTTGTGAAGTCGGCGCTGCTGGGTCGC
TTGGGCGGCTAGCTCGGCAACGATAACACCTCTTCTGCGGTGTGGGAGCTGTTGGGTGGCTTTTGTGTTTAGCTTGGCGA
CGACGTCCTGCATTTGGGCTCCGCCATCATGGTTAGTAGTGTAGCGGTGGGTTTTAGCCGGTTTTCCTGTAATTAACCAT
GCGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis