Browse Element(s) Details


Os.53969.1.S1_at

Description gb:AK101089.1
DB_XREF= gi:32986298
TID=Os.53969.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024L12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024L12, full insert sequence.
FL= gb:AK101089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2270011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53969.1.S1_at--939--2051Chr03:13090229..13090253 (25 bp)
ACTTGGTCCGGTCCTTTGGCTGATC
LOC_Os03g22700
Os.53969.1.S1_at--740--8331Chr03:13090212..13090236 (25 bp)
GGCTGATCTCTCTGCAGTTGGGAAA
LOC_Os03g22700
Os.53969.1.S1_at--652--5531Chr03:13090179..13090203 (25 bp)
GAAACACAAGTTTGGCCGCTCATCA
LOC_Os03g22700
Os.53969.1.S1_at--473--3331Chr03:13090143..13090167 (25 bp)
CACTGCCCGTGCTCGGTAAGGAAAA
LOC_Os03g22700
Os.53969.1.S1_at--409--1431Chr03:13090075..13090099 (25 bp)
AGAAAATACTCCTCAGCAGCTACCA
LOC_Os03g22700
Os.53969.1.S1_at--10--9991Chr03:13090055..13090079 (25 bp)
TACCATGCGCTGTTTCGCAAACGAG
LOC_Os03g22700
Os.53969.1.S1_at--431--6471Chr03:13090021..13090045 (25 bp)
GATAACTTGATTTCTTCTTGACTTA
LOC_Os03g22700
Os.53969.1.S1_at--1146--9731Chr03:13089909..13089933 (25 bp)
TCAATTCTTATAGCCCTGGTGCATT
LOC_Os03g22700
Os.53969.1.S1_at--958--6411Chr03:13089854..13089878 (25 bp)
GATCTCTAGCATTTCAGGACATCCC
LOC_Os03g22700
Os.53969.1.S1_at--650--2471Chr03:13089819..13089843 (25 bp)
AACACCTTTCTTCAATTGCAACCTG
LOC_Os03g22700
Os.53969.1.S1_at--94--2631Chr03:13089800..13089824 (25 bp)
AACCTGTGTAATCATTCCTCATCGA
LOC_Os03g22700
Target Sequence 
ACTTGGTCCGGTCCTTTGGCTGATCTCTCTGCAGTTGGGAAACAGAAATGGAAACACAAGTTTGGCCGCTCATCAAAACA
ACCATCCACTGCCCGTGCTCGGTAAGGAAAAGGAACTGAAGAGTAATATTTATAGACAGAGTCTTCAGTTATGGAGAAAA
TACTCCTCAGCAGCTACCATGCGCTGTTTCGCAAACGAGGCATGCGATGATAACTTGATTTCTTCTTGACTTATTGTCAT
TGGATTATTTTTCGAACATCGGTTGTATAGGCTGTGGAGGGAGCTCAGGTAGTTTACCTGTGTACATTAGGTTCTGTTTT
TCAATTCTTATAGCCCTGGTGCATTTGGTGTTAGATTCATTTGAGTGGAAGCTTAGATCTCTAGCATTTCAGGACATCCC
CTTCCATTGTAACACCTTTCTTCAATTGCAACCTGTGTAATCATTCCTCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis