Browse Element(s) Details


Os.10111.1.S1_at

Description gb:AK073164.1
DB_XREF= gi:32983187
TID=Os.10111.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023B01, full insert sequence.
FL= gb:AK073164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2274011/11Nucleolar protein NOP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10111.1.S1_at--246--371Chr03:13112931..13112955 (25 bp)
ATCAAGAGACGGAGCCTGCACCAGC
LOC_Os03g22740
Os.10111.1.S1_at--440--3851Chr03:13112916..13112940 (25 bp)
CTGCACCAGCAGAGAAGACCACTAA
LOC_Os03g22740
Os.10111.1.S1_at--1063--5871Chr03:13112837..13112861 (25 bp)
GAGCGAGGAATCTCCTGCGGCCGAT
LOC_Os03g22740
Os.10111.1.S1_at--99--1631Chr03:13112773..13112797 (25 bp)
AGCGAGGAACCTCCAGTGGCCACTA
LOC_Os03g22740
Os.10111.1.S1_at--1010--5291Chr03:13112601..13112625 (25 bp)
GAAGGACATGTTATCTTGAGTAGCA
LOC_Os03g22740
Os.10111.1.S1_at--270--1071Chr03:13112575..13112599 (25 bp)
AGGGTTGAAGAATCGCTGCTCTGTA
LOC_Os03g22740
Os.10111.1.S1_at--272--2292Chr12:24014917..24015170 (25 bp)
AAATGCAACATTCCGAGTTTTTCCA
NONE
Os.10111.1.S1_at--154--6051Chr03:13112536..13112560 (25 bp)
GAGTTTTTCCATGCCGGTTAGTTGT
LOC_Os03g22740
Os.10111.1.S1_at--18--8531Chr03:13112494..13112518 (25 bp)
TGGACTTGTTACTCATGGATCTTGT
LOC_Os03g22740
Os.10111.1.S1_at--77--7971Chr03:13112478..13112502 (25 bp)
GGATCTTGTATTCAATTGCCTACTG
LOC_Os03g22740
Os.10111.1.S1_at--995--6331Chr03:13112430..13112454 (25 bp)
GATGCTTTTGCTCATTCTATGTGAA
LOC_Os03g22740
Target Sequence 
ATCAAGAGACGGAGCCTGCACCAGCAGAGAAGACCACTAAAGAGGATGGTGACCAAGAAGGTGAAAAGAAAAAGAAGAAA
AAGAAGTCCAAAGAGAGCGAGGAATCTCCTGCGGCCGATGCTGACGGTGGCAAGAAAAAGAAAAAGACGTCCAAGGAGAG
CGAGGAACCTCCAGTGGCCACTACAGAAGGTGAGAAGAAGGAGAAGAAGAAAAAGAAGAAATCTGATTCACAAGATGCCG
AGGATGTTGCCATGGAAACCGAGGAGTCTGGCAAGAAAGAGAAGAAGAAAAAGAAGAAACNCCATAGCGATGAATGAAGG
ATACACTGGAGAAGGACATGTTATCTTGAGTAGCATAGGGTTGAAGAATCGCTGCTCTGTAAAATGCAACATTCCGAGTT
TTTCCATGCCGGTTAGTTGTAGGATAGGCATCAAGTTTGGACTTGTTACTCATGGATCTTGTATTCAATTGCCTACTGAA
TTTTGGAATTGGAGAGCATATGATGCTTTTGCTCATTCTATGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis