Browse Element(s) Details


Os.17351.1.A1_at

Description gb:CB625908
DB_XREF= gi:29620897
DB_XREF=OSIIEa15L07.r
CLONE=OSIIEa15L07
TID=Os.17351.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.17351 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_197367.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2278011/11isoflavone reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17351.1.A1_at--1043--8371Chr03:13135122..13135146 (25 bp)
GGCGCGAGCCCAGGTTCATCAAGGT
LOC_Os03g22780
Os.17351.1.A1_at--541--1011Chr03:13135111..13135135 (25 bp)
AGGTTCATCAAGGTGCCGATCCAGG
LOC_Os03g22780
Os.17351.1.A1_at--525--1031Chr03:13135101..13135125 (25 bp)
AGGTGCCGATCCAGGTCATGGACGC
LOC_Os03g22780
Os.17351.1.A1_at--716--8531Chr03:13135083..13135107 (25 bp)
TGGACGCCGCCATCTGGGTGCTCGA
LOC_Os03g22780
Os.17351.1.A1_at--854--5171Chr03:13135011..13135035 (25 bp)
GCAAGATCGGGAGGTACTACGCGTC
LOC_Os03g22780
Os.17351.1.A1_at--60--2031Chr03:13134996..13135020 (25 bp)
ACTACGCGTCGGAGAGCATGCTGGT
LOC_Os03g22780
Os.17351.1.A1_at--756--5631Chr03:13134916..13134940 (25 bp)
GACACGCTCGAGCAGTTCTTCGAGA
LOC_Os03g22780
Os.17351.1.A1_at--507--9351Chr03:13134832..13134856 (25 bp)
TCGCTCGCCTTCTTGGCTGCCATTG
LOC_Os03g22780
Os.17351.1.A1_at--61--1211Chr03:13134805..13134829 (25 bp)
AGTTTCTTGGTGCTTGTAAGTTGTA
LOC_Os03g22780
Os.17351.1.A1_at--576--2051Chr03:13134773..13134797 (25 bp)
ACTTCATCCAGAGTGTTTGTAGAGA
LOC_Os03g22780
Os.17351.1.A1_at--432--6631Chr03:13134743..13134767 (25 bp)
GTTGTTCTTAATGTTTCAGACGCCA
LOC_Os03g22780
Target Sequence 
GGCGCGAGCCCAGGTTCATCAAGGTGCCGATCCAGGTCATGGACGCCGCCATCTGGGTGCTCGACGCGCTGGCCAAGGTG
TTCCCCGGGGTGGAGGACGCGGCGGAGTTCGGCAAGATCGGGAGGTACTACGCGTCGGAGAGCATGCTGGTGCTCGACCC
GGACACCGGCGAGTACAGCGACGAGATGACGCCCANCTACGGCAGCGACACGCTCGAGCAGTTCTTCGAGAGGGTGATCA
GGGAAGGCATGGCAGGGCAGGAGCTCGGCGAGCAGACCATCTTNTAGGCCTCGCTCGCCTTCTTGGCTGCCATTGCCAGT
TTCTTGGTGCTTGTAAGTTGTAAATTACTACTTCATCCAGAGTGTTTGTAGAGATGTGAGTTGTTCTTAATGTTTCAGAC
GCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17351.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis