Browse Element(s) Details


Os.186.1.S1_at

Description gb:L36320.1
DB_XREF= gi:538429
GEN=cuznsod1
TID=Os.186.1
CNT=101
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.186 (NCBI UniGene Cluster)
DEF=Oryza sativa (clone cu101) superoxide dismutase (cuznsod1) mRNA, complete cds.
PROD=superoxide dismutase
FL= gb:L36320.1 gb:D00999.1 gb:AK061662.1 gb:AK120692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2281011/11Superoxide dismutase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22820Os.55682.1.S1_at11/113+13168311..13169148expressed protein
LOC_Os03g22830Os.9901.1.S1_at11/113+13177857..13180130Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006878biological_processcopper ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0009416biological_processresponse to light stimulus
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005737cellular_componentcytoplasm
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004785molecular_functioncopper, zinc superoxide dismutase activity
GO:0016532molecular_functionsuperoxide dismutase copper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.186.1.S1_at--889--10211Chr03:13161638..13161662 (25 bp)
TATTCATGCACTTGGTGACACCACC
LOC_Os03g22810
Os.186.1.S1_at--465--6671Chr03:13161667..13161815 (25 bp)
GTTGCATGTCAACTGGGCCACACTA
LOC_Os03g22810
Os.186.1.S1_at--925--3411Chr03:13161845..13161869 (25 bp)
CAGAAGATGAGACCCGCCATGCTGG
LOC_Os03g22810
Os.186.1.S1_at--6--6431Chr03:13161871..13161895 (25 bp)
GATCTTGGAAATGTCACCGCTGGAG
LOC_Os03g22810
Os.186.1.S1_at--552--7111Chr03:13162331..13162355 (25 bp)
GTCAGATTCCACTTACTGGACCAAA
LOC_Os03g22810
Os.186.1.S1_at--470--431Chr03:13162360..13162384 (25 bp)
ATCATTGGCAGAGCCGTCGTTGTGC
LOC_Os03g22810
Os.186.1.S1_at--566--4671Chr03:13163039..13163061 (23 bp)
GCGGGATCATCGGACTTCAAGGCTG
LOC_Os03g22810
Os.186.1.S1_at--1032--5411Chr03:13163103..13163127 (25 bp)
GAAGCCTGAAACTCTACGAGCTCTT
LOC_Os03g22810
Os.186.1.S1_at--1071--6831Chr03:13163132..13163156 (25 bp)
GTTTCGTCTTTACCTGAGTGGCTAC
LOC_Os03g22810
Os.186.1.S1_at--111--471Chr03:13163181..13163205 (25 bp)
ATCTCTGCGCATGGTTTTTGGTGTA
LOC_Os03g22810
Os.186.1.S1_at--676--10871Chr03:13163226..13163250 (25 bp)
TTGGCGCCCAATGAACTATGTGTTT
LOC_Os03g22810
Target Sequence 
TATTCATGCACTTGGTGACACCACCAATGGTTGCATGTCAACTGGGCCACACTACAATCCTGCCGGAAAGGAGCATGGAG
CACCAGAAGATGAGACCCGCCATGCTGGTGATCTTGGAAATGTCACCGCTGGAGAAGATGGTGTTGCTAATATCCATGTT
GTTGACAGTCAGATTCCACTTACTGGACCAAATTCAATCATTGGCAGAGCCGTCGTTGTGCATGCCGATCCTGATGATCT
TGGAAAGGGTGGGCACGAGCTGAGCAAGACCACCGGAAACGCTGGTGGCCGTGTTGCTTGCGGGATCATCGGACTTCAAG
GCTGAAACCTGGAGGTGTGAACTCACCTTCCATCTCCCAGCACCAGAAGCCTGAAACTCTACGAGCTCTTAGCCCGTTTC
GTCTTTACCTGAGTGGCTACTCTAGATTCTACAATAAGCACCTGATCTCTGCGCATGGTTTTTGGTGTACCATTCTGTCG
CCCGCATCGTTGGCGCCCAATGAACTATGTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis