Browse Element(s) Details


OsAffx.18172.1.S1_x_at

Description gb:NM_195023.1
DB_XREF= gi:37531405
TID=OsAffx.18172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015J03.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0844011/11hypothetical protein
LOC_Os03g228101/11Superoxide dismutase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08400OsAffx.6603.1.S1_at6/1110+4328623..4330073hypothetical protein
LOC_Os10g08410NANA10+4335216..4336940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08420OsAffx.31892.2.S1_at2/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08420OsAffx.31892.2.S1_x_at1/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08430OsAffx.30337.1.S1_at11/1110+4347105..4347566hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_x_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.2.S1_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_at9/1110+4350122..4350574hypothetical protein
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006878biological_processcopper ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0009416biological_processresponse to light stimulus
GO:0019430biological_processremoval of superoxide radicals
GO:0046688biological_processresponse to copper ion
GO:0005737cellular_componentcytoplasm
GO:0005777cellular_componentperoxisome
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004785molecular_functioncopper, zinc superoxide dismutase activity
GO:0016532molecular_functionsuperoxide dismutase copper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18172.1.S1_x_at--326--6991Chr10:4350476..4350500 (25 bp)
GTACGGAGTCGGTGGCTTTGATCAA
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--430--4871Chr10:4350462..4350486 (25 bp)
GCTTTGATCAAGACGGCCGGGAGAG
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--531--6131Chr10:4350440..4350464 (25 bp)
GAGGGATGGCGGCAGTGCGGCTGAT
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--1128--3452Chr03:13158819..13158841 (22 bp)
CAGTGCGGCTGATGGTGGCGGTGAC
LOC_Os03g22810
OsAffx.18172.1.S1_x_at--838--8471Chr10:4350391..4350415 (25 bp)
TGGCAGACATGGACACGATTAGGGC
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--945--2111Chr10:4350385..4350409 (25 bp)
ACATGGACACGATTAGGGCGTGGTT
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--783--8571Chr10:4350351..4350389 (25 bp)
TGGTTGGCTGGGAGCATCTCCGACC
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--247--8351Chr10:4350346..4350366 (21 bp)
GGCTGGGAGCATCTCCGACCCTAGA
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--858--8071Chr10:4350341..4350365 (25 bp)
GGAGCATCTCCGACCCTAGAGGAGT
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--205--4971Chr10:4350338..4350362 (25 bp)
GCATCTCCGACCCTAGAGGAGTCAA
LOC_Os10g08440
OsAffx.18172.1.S1_x_at--1033--3791Chr10:4350334..4350358 (25 bp)
CTCCGACCCTAGAGGAGTCAATTCC
LOC_Os10g08440
Target Sequence 
GTACGGAGTCGGTGGCTTTGATCAAGACGGCCGGGAGAGGGATGGCGGCAGTGCGGCTGATGGTGGCGGTGACCAGAAAG
GGGTGTGGCAGACATGGACACGATTAGGGCGTGGTTGGCTGGGAGCATCTCCGACCCTAGAGGAGTCAATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18172.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis