Browse Element(s) Details


OsAffx.30338.2.S1_x_at

Description tigr:9638.m00714
TID=OsAffx.30338.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0846011/11hypothetical protein
LOC_Os04g291001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08410NANA10+4335216..4336940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08420OsAffx.31892.2.S1_at2/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08420OsAffx.31892.2.S1_x_at1/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08430OsAffx.30337.1.S1_at11/1110+4347105..4347566hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_x_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.2.S1_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_at9/1110+4350122..4350574hypothetical protein
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30338.2.S1_x_at--1004--5411Chr10:4360353..4360377 (25 bp)
GAAGCCTGACTTAGATGCCAATGTT
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--561--3271Chr10:4360383..4360407 (25 bp)
CAACAGTACAGGTCGAATGCCACAT
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--1094--3011Chr10:4360398..4360422 (25 bp)
AATGCCACATGGTAGGCTAGCCATT
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--171--951Chr10:4360468..4360492 (25 bp)
AGGAAGAGGGCTGTGACACCGCCAC
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--748--3371Chr10:4360490..4360514 (25 bp)
CACCATCACGTGTCTCTGCAAGAGA
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--850--6011Chr10:4360550..4360574 (25 bp)
GAGATAATGCTTCTTACCGTGGCTT
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--602--8811Chr10:4360581..4360694 (25 bp)
TGTTGTGCGGGCATTGGCTGCTAAA
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--41--8111Chr10:4360698..4360722 (25 bp)
GGACTTGACTATGAAACCCTTGTGA
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--545--3111Chr10:4360726..4360957 (25 bp)
AATATGCTCCTGAGTTGGCTTCCTC
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--850--2332Chr10:4360962..4360986 (25 bp)
AAAGATGTTGGGTCTGCTCCAGATC
LOC_Os10g08460
OsAffx.30338.2.S1_x_at--443--4791Chr10:4360977..4361001 (25 bp)
GCTCCAGATCATCATGAGGCTGAAT
LOC_Os10g08460
Target Sequence 
GAAGCCTGACTTAGATGCCAATGTTATTTACAACAGTACAGGTCGAATGCCACATGGTAGGCTAGCCATTGCTAATGAGG
CAATTAGCAATAAAGATAAGGATGCAATTAAGTCAAGGAAGAGGGCTGTGACACCGCCACCATCACGTGTCTCTGCAAGA
GAAATTTATCAACAAAAGAAGATTAAATGTTTGGAAAGAGATAATGCTTCTTACCGTGGCTTGGAGTGTGTTGTGCGGGC
ATTGGCTGCTAAAGGTGGACTTGACTATGAAACCCTTGTGAGACAATATGCTCCTGAGTTGGCTTCCTCAACTAAAGATG
TTGGGTCTGCTCCAGATCATCATGAGGCTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30338.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis