Browse Element(s) Details


OsAffx.18173.1.S1_at

Description gb:NM_195029.1
DB_XREF= gi:37531417
TID=OsAffx.18173.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015J03.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g085209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18173.1.S1_at--392--5011Chr10:4386794..4386818 (25 bp)
GCATGGCCCACGTGAGTTCGACGAT
LOC_Os10g08520
OsAffx.18173.1.S1_at--120--6071Chr10:4386781..4386805 (25 bp)
GAGTTCGACGATCTCTACAACAGAA
LOC_Os10g08520
OsAffx.18173.1.S1_at--48--2311NONE
AAAGGCATCACTGACATTCGCTACT
NONE
OsAffx.18173.1.S1_at--963--2051Chr10:4386477..4386501 (25 bp)
ACATTCGCTACTTCACTAACTCAAA
LOC_Os10g08520
OsAffx.18173.1.S1_at--311--3691Chr10:4386462..4386486 (25 bp)
CTAACTCAAAGATGCACTTCGCCGA
LOC_Os10g08520
OsAffx.18173.1.S1_at--841--2331Chr10:4386455..4386479 (25 bp)
AAAGATGCACTTCGCCGAGGACTTC
LOC_Os10g08520
OsAffx.18173.1.S1_at--1042--951Chr10:4386438..4386462 (25 bp)
AGGACTTCCTCATGCCGACTCTCAA
LOC_Os10g08520
OsAffx.18173.1.S1_at--793--9471Chr10:4386411..4386435 (25 bp)
TCTGCATCACCAATGCCTATATCTA
LOC_Os10g08520
OsAffx.18173.1.S1_at--284--9771Chr10:4386386..4386410 (25 bp)
TAATGACAGAGCGACTGCGGCGACA
LOC_Os10g08520
OsAffx.18173.1.S1_at--99--4611Chr10:4386376..4386400 (25 bp)
GCGACTGCGGCGACATCAATGGCTT
LOC_Os10g08520
OsAffx.18173.1.S1_at--778--4411Chr10:4385925..4385949 (25 bp)
GCCAGCAGTTGTGCCGTCAGCAGGA
NONE
Target Sequence 
GCATGGCCCACGTGAGTTCGACGATCTCTACAACAGAAAAGGCATCACTGACATTCGCTACTTCACTAACTCAAAGATGC
ACTTCGCCGAGGACTTCCTCATGCCGACTCTCAACCTCTGCATCACCAATGCCTATATCTATAATGACAGAGCGACTGCG
GCGACATCAATGGCTTCTTCAAAGCTCATNNNNNNNNTTNNNCGNNNNNNNNCNNNNNNNNNNANNNNCNNNNCNNNNNN
NNNNNGNCGTCCGCCAGCAGTTGTGCCGTCAGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis