Browse Element(s) Details


OsAffx.30340.1.S1_x_at

Description gb:NM_195027.1
DB_XREF= gi:37531413
TID=OsAffx.30340.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0015J03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0850011/11hypothetical protein
LOC_Os03g338003/11hypothetical protein
LOC_Os08g441242/11retrotransposon protein, putative, unclassified
LOC_Os12g180902/11hypothetical protein
LOC_Os02g516501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30340.1.S1_x_at--647--2911Chr10:4378470..4378494 (25 bp)
AAGGAACCAACGGTGCGGCGCGGCG
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--462--8031Chr10:4378574..4378598 (25 bp)
GGAGTGCAGTGGGTTCGGGCGAAAT
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--651--7631Chr10:4378624..4378648 (25 bp)
GGGATCGTTTATATACACTCGTGGA
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--1125--2856Chr10:4378687..4378711 (25 bp)
AAGTGGCGAGGCATCGTGGGATCGT
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--1055--7514Chr10:4378770..4378794 (25 bp)
GTGGCTTCCGGTCCCACGCGAGAGA
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--278--10371Chr10:4378833..4378857 (25 bp)
TTTTTAGCGGCCATGGTGGCAACGG
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--160--7531Chr10:4378848..4378872 (25 bp)
GTGGCAACGGCAGTTGCCGACCTAA
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--618--1931Chr10:4378854..4378878 (25 bp)
ACGGCAGTTGCCGACCTAAGGTTGG
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--847--795Chr10:4378897..4378921 (25 bp)
ATGGGTCCCATCTGTCGGCCAAAGA
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--983--7796Chr10:4378900..4378924 (25 bp)
GGTCCCATCTGTCGGCCAAAGAGGA
LOC_Os10g08500
OsAffx.30340.1.S1_x_at--828--6192Chr10:4378942..4378966 (25 bp)
GAGGCAAACTAGACTTCTGGGAGGA
LOC_Os10g08500
Target Sequence 
AAGGAACCAACGGTGCGGCGCGGCGGTGGCTACGGCGACGGCGGCGTGCAGCCGGAGCTCGCCGGCGGGCGGCATCGCGC
GGAGCAGCGTGGGGAGAGCGAGGAGGAGTGCAGTGGGTTCGGGCGAAATGGGGGAAACGAGAGAGGATGCTCCGGGGATC
GTTTATATACACTCGTGGAGGGGGAATCGTGGCCGAGTGGGGCGGCAACGGCCAGTGAAGTGGCGAGGCATCGTGGGATC
GTGGGGGCCAAATCGGCGCCGGTTTTTGGGGAAAAACGAGGGAGGAGGTGGAGGAGAGGGGTGGCTTCCGGTCCCACGCG
AGAGAGGGCTCGAGGAGGCCAGGAATGGCGGCGACGTGGGCGGTTTTTAGCGGCCATGGTGGCAACGGCAGTTGCCGACC
TAAGGTTGGGGATGATAGGTGGGGTCCATGGGTCCCATCTGTCGGCCAAAGAGGAGAGGGAGGCCGGCTGGGGAGGCAAA
CTAGACTTCTGGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30340.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis