Browse Element(s) Details


OsAffx.15863.1.S1_at

Description tigr:9634.m03917
TID=OsAffx.15863.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161554 carbonic anhydrase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4077010/11expressed protein
LOC_Os10g084741/11Cytochrome P450 family protein, expressed
LOC_Os06g485601/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40710Os.7599.1.S1_at11/116+24267902..24272745transfactor, putative, expressed
LOC_Os06g40720Os.7719.1.S1_at7/116+24271756..24275026calcium-binding EF hand family protein, putative, expressed
LOC_Os06g40730Os.49581.1.S1_at11/116+24276342..24281489expressed protein
LOC_Os06g40740Os.9761.1.S1_at11/116+24286960..24291743expressed protein
LOC_Os06g40750Os.37907.1.S1_at9/116+24292281..24294703expressed protein
LOC_Os06g40760Os.55632.1.S1_at9/116+24295665..24296311expressed protein
LOC_Os06g40770OsAffx.15863.1.S1_at10/116+24296299..24298143expressed protein
LOC_Os06g40780Os.51358.1.S1_at11/116+24310311..24315385Protein MONOCULM 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
GO:0016740molecular_functiontransferase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15863.1.S1_at--109--8551Chr06:24298001..24298025 (25 bp)
TGGAGCTGCACATGCTGCACCAGAG
LOC_Os06g40770
OsAffx.15863.1.S1_at--663--9031Chr06:24297986..24298010 (25 bp)
TGCACCAGAGCGAGACACGCGACGG
LOC_Os06g40770
OsAffx.15863.1.S1_at--418--5811Chr06:24297915..24297939 (25 bp)
GACGCCACCCTGGACATGGTGATCA
LOC_Os06g40770
OsAffx.15863.1.S1_at--858--811Chr06:24297900..24297924 (25 bp)
ATGGTGATCACCCTCTGTTCCACAT
LOC_Os06g40770
OsAffx.15863.1.S1_at--491--8811Chr06:24297885..24297909 (25 bp)
TGTTCCACATCTTCTACTATCTACA
LOC_Os06g40770
OsAffx.15863.1.S1_at--398--10151Chr06:24297706..24297892 (25 bp)
TATCTACACGATTTCGGTGACCTCC
LOC_Os06g40770
OsAffx.15863.1.S1_at--642--8416Chr11:17527597..17527616 (20 bp)
GGCCTAACCGATAAAGTGAACCCTG
NONE
OsAffx.15863.1.S1_at--246--1431Chr06:24297422..24297446 (25 bp)
AGAACACCGCCGTAGAGGAAGACTA
LOC_Os06g40770
OsAffx.15863.1.S1_at--431--2091NONE
ACATCAGCATGATACGTGCGGCGCG
NONE
OsAffx.15863.1.S1_at--62--5911Chr06:24296485..24296509 (25 bp)
GAGCTCCTCTGCGAGAAGTCGTCCA
LOC_Os06g40770
OsAffx.15863.1.S1_at--701--2851Chr06:24296360..24296494 (25 bp)
AAGTCGTCCACGATGGTGACACTGG
LOC_Os06g40770
Target Sequence 
TGGAGCTGCACATGCTGCACCAGAGCGAGACACGCGACGGCCGCTACGCCGTCGTCGCCCAGCTGTTCGACATCGGCCAC
CGCCGCGACGCCACCCTGGACATGGTGATCACCCTCTGTTCCACATCTTCTACTATCTACACGATTTCGGTGACCTCCGA
CACGATCGGCCTAACCGATAAAGTGAACCCTGCACGAGAAAAGAACACCGCCGTAGAGGAAGACTACGAAAAAGTATACA
GTTGTAACGGAATAGCAAATATATACCAATCTGGTACCTTTAATACCAAATATGATACACCGTATAGGTATGATGACATC
AGCATGATACGTGCGGCGCGTGTCGCGGCAGCAGATGGAGCTCCTCTGCGAGAAGTCGTCCACGATGGTGACACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis