Browse Element(s) Details


Os.27715.1.S1_a_at

Description gb:AK108519.1
DB_XREF= gi:32993728
TID=Os.27715.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.27715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBb0015J03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B01, full insert sequence.
FL= gb:AK108519.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0847411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08420OsAffx.31892.2.S1_at2/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08420OsAffx.31892.2.S1_x_at1/1110+4338863..4342140retrotransposon protein, putative, unclassified
LOC_Os10g08430OsAffx.30337.1.S1_at11/1110+4347105..4347566hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_x_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.2.S1_at11/1110+4350122..4350574hypothetical protein
LOC_Os10g08440OsAffx.18172.1.S1_at9/1110+4350122..4350574hypothetical protein
LOC_Os10g08450OsAffx.8461.1.S1_at11/1110+4354817..4358316transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08460OsAffx.30338.2.S1_x_at11/1110+4358597..4361358hypothetical protein
LOC_Os10g08474Os.27715.1.S1_a_at11/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08474OsAffx.15863.1.S1_at1/1110+4366017..4368936Cytochrome P450 family protein, expressed
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27715.1.S1_a_at--1109--2392Chr12:7107756..7107974 (25 bp)
AAACATTTCGACTGCATTCACCAGC
NONE
Os.27715.1.S1_a_at--347--10531Chr10:4368416..4368440 (25 bp)
TTCACCAGCTCCGTTATTATTACCA
LOC_Os10g08474
Os.27715.1.S1_a_at--223--10411Chr10:4368432..4368456 (25 bp)
TTATTACCACGGCAAGCTACGAGGA
LOC_Os10g08474
Os.27715.1.S1_a_at--1047--6731Chr10:4368500..4368524 (25 bp)
GTTAATAAACGTGTGGGCCATGGGT
LOC_Os10g08474
Os.27715.1.S1_a_at--472--3531Chr10:4368617..4368641 (25 bp)
CATCCCATTTGGTGCGGGACGACGA
LOC_Os10g08474
Os.27715.1.S1_a_at--230--8111Chr10:4368633..4368657 (25 bp)
GGACGACGAATCTGCCCTGGAATGC
LOC_Os10g08474
Os.27715.1.S1_a_at--933--811Chr10:4368672..4368696 (25 bp)
ATGGTGCATGTACTTCTTGCATCCC
LOC_Os10g08474
Os.27715.1.S1_a_at--836--3651Chr10:4368684..4368708 (25 bp)
CTTCTTGCATCCCTGTTAATTCATT
LOC_Os10g08474
Os.27715.1.S1_a_at--338--2971Chr10:4368712..4368736 (25 bp)
AATGGAGACTCCCAGCTGAGGTAGA
LOC_Os10g08474
Os.27715.1.S1_a_at--1138--7731Chr10:4368768..4368792 (25 bp)
GGTGTGACTTTAGCAAAAGCCAATC
LOC_Os10g08474
Os.27715.1.S1_a_at--248--3191Chr10:4368788..4368812 (25 bp)
CAATCATTTATGTGCGATGGCCGCA
LOC_Os10g08474
Target Sequence 
AAACATTTCGACTGCATTCACCAGCTCCGTTATTATTACCACGGCAAGCTACGAGGACGATCCAAATAATGGGTTATACA
ATACCTAAAGGTACTAGAGTGTTAATAAACGTGTGGGCCATGGGTCGAGACGAAGATATATGGCCAGAAGCGGGAAAGTT
TATTCCGGAGAGATTCCTAGAAAGGACAATTGACTACAAAGGTGGAGATTTGGAGCTCATCCCATTTGGTGCGGGACGAC
GAATCTGCCCTGGAATGCCATTAGCTGTTAGGATGGTGCATGTACTTCTTGCATCCCTGTTAATTCATTTTAAATGGAGA
CTCCCAGCTGAGGTAGAAGGAAATAGAATTGATATGACGGAGAAGTTTGGTGTGACTTTAGCAAAAGCCAATCATTTATG
TGCGATGGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27715.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis