Browse Element(s) Details


Os.3395.1.S1_at

Description gb:AB001882.1
DB_XREF= gi:3618307
TID=Os.3395.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3395 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for zinc finger protein, complete cds, clone:C60910.
PROD=zinc finger protein
FL= gb:AK099864.1 gb:AK101822.1 gb:AB001882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2277011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22730Os.6728.1.S1_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.1.S1_a_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22730Os.6728.2.S1_x_at11/113+13104979..13109055Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3395.1.S1_at--555--3531Chr03:13132934..13132955 (22 bp)
CATGCCGACGCCTGGTTATGAGAAT
LOC_Os03g22770
Os.3395.1.S1_at--745--6551Chr03:13133623..13133647 (25 bp)
GATTACCCTGCGCTAAATGATCCGT
LOC_Os03g22770
Os.3395.1.S1_at--618--2991Chr03:13133638..13133662 (25 bp)
AATGATCCGTGCAAGGTCGAGTTCA
LOC_Os03g22770
Os.3395.1.S1_at--580--1311Chr03:13133717..13133741 (25 bp)
AGATGTCTGAACTTTGCCCCAGCAT
LOC_Os03g22770
Os.3395.1.S1_at--631--1811Chr03:13133794..13133818 (25 bp)
ACGCCAATGCAAGTTCTACCCAAAA
LOC_Os03g22770
Os.3395.1.S1_at--684--2271Chr03:13133816..13133840 (25 bp)
AAATGCCAGAATTTGTTCCTTGCCC
LOC_Os03g22770
Os.3395.1.S1_at--328--8171Chr03:13133846..13133870 (25 bp)
GGAACTTGGTCATTTCTCGCTATAA
LOC_Os03g22770
Os.3395.1.S1_at--4--8251Chr03:13134022..13134046 (25 bp)
GGCAGGTCCGGTATGAGTCCCGCAA
LOC_Os03g22770
Os.3395.1.S1_at--138--1151Chr03:13134037..13134061 (25 bp)
AGTCCCGCAAAGCTCGTGCTGATAG
LOC_Os03g22770
Os.3395.1.S1_at--1002--531Chr03:13134076..13134100 (25 bp)
AGGGCCGTTTTGCTAAAGTCAATCA
LOC_Os03g22770
Os.3395.1.S1_at--698--8291Chr03:13134226..13134250 (25 bp)
GGCTACGCCACGCTGAGGAGAATTT
LOC_Os03g22770
Target Sequence 
CATGCCGACGCCTGGTTATGAGAATGGTGGATGGGATAACAGCGATTACCCTGCGCTAAATGATCCGTGCAAGGTCGAGT
TCACATATGAGCAACCTCCAGCCAGCTCAGCTGAAGCATGTATTTCATCATTTGTTCAGATGTCTGAACTTTGCCCCAGC
ATGAGCAATGGTAGCAGCATGGAGGAAACCCACCAGACAAACCCTGGAAATGGCACGCCAATGCAAGTTCTACCCAAAAT
GCCAGAATTTGTTCCTTGCCCCGACAGGAACTTGGTCATTTCTCGCTATAAAGAGAAGAGGAAGACAAGAAGATTCGACA
GGCAGGTCCGGTATGAGTCCCGCAAAGCTCGTGCTGATAGCAGGCTGAGGATTAAGGGCCGTTTTGCTAAAGTCAATCAG
ATTTGAGCCTTCATTTCTGTAATATATTTTGCATCTTGGACATGAGTAATACTAATTAGGACCAAGCAGATATAGTACAA
GAAAAAATATCAGCATTTTGTATGTAACTATGTACCCACCCNANGTGGCTACGCCACGCTGAGGAGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis