Browse Element(s) Details


Os.13708.2.A1_at

Description gb:CB655990
DB_XREF= gi:29659715
DB_XREF=OSJNEc09N17.r
CLONE=OSJNEc09N17
TID=Os.13708.2
CNT=32
FEA=EST
TIER=Stack
STK=13
UG=Os.13708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-043-C06, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2279011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22740Os.10111.1.S1_at11/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22740Os.6728.2.S1_x_at4/113+13112402..13116321Nucleolar protein NOP5, putative, expressed
LOC_Os03g22750OsAffx.3299.1.S1_at11/113+13119521..13120781F-box domain containing protein
LOC_Os03g22750Os.15941.2.S1_x_at1/113+13119521..13120781F-box domain containing protein
LOC_Os03g22760OsAffx.25194.1.S1_at11/113+13127681..13127941hypothetical protein
LOC_Os03g22770Os.3395.1.S1_at11/113+13131820..13134377CCT motif family protein, expressed
LOC_Os03g22780Os.17351.1.A1_at11/113+13134635..13136237isoflavone reductase, putative, expressed
LOC_Os03g22790Os.13708.2.A1_at11/113+13140758..13142846Glycosyl hydrolase family 14 protein, expressed
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009570cellular_componentchloroplast stroma
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13708.2.A1_at--100--4011Chr03:13142313..13142337 (25 bp)
CGTGCCACTTCACGTACCAGCGGAT
LOC_Os03g22790
Os.13708.2.A1_at--621--4111Chr03:13142502..13142526 (25 bp)
CGAAGCAGGCGCAGACAGTGTAGAC
LOC_Os03g22790
Os.13708.2.A1_at--652--2131Chr03:13142516..13142540 (25 bp)
ACAGTGTAGACGCAGCTGGCACGCT
LOC_Os03g22790
Os.13708.2.A1_at--398--8511Chr03:13142532..13142556 (25 bp)
TGGCACGCTGCGACTCGTAGCTGTA
LOC_Os03g22790
Os.13708.2.A1_at--946--4091Chr03:13142542..13142566 (25 bp)
CGACTCGTAGCTGTACATATGTGCA
LOC_Os03g22790
Os.13708.2.A1_at--704--772Chr03:13142560..13142584 (25 bp)
ATGTGCAGTAGTAATACCAGTATAC
LOC_Os03g22790
Os.13708.2.A1_at--399--9971Chr03:13142574..13142598 (25 bp)
TACCAGTATACTGCTGTAATTACAG
LOC_Os03g22790
Os.13708.2.A1_at--722--4731Chr03:13142586..13142610 (25 bp)
GCTGTAATTACAGCAGTACAATTTA
LOC_Os03g22790
Os.13708.2.A1_at--603--10472Chr03:13142608..13142632 (25 bp)
TTACTATTACTACTCCATTTTTATT
LOC_Os03g22790
Os.13708.2.A1_at--960--391Chr03:13142639..13142663 (25 bp)
ATCAGCGGTAAATTCTCAGTGTGTA
LOC_Os03g22790
Os.13708.2.A1_at--1035--7851Chr03:13142730..13142754 (25 bp)
GGTATTTTGTAATGATCTTATGATC
LOC_Os03g22790
Target Sequence 
CGTGCCACTTCACGTACCAGCGGATGGGCGCGGAGTTNTTCTCGCCGGACCACTGGCCGCTGTTCGTGCAGCTGGTGCGC
GCCATGGAGTGCCCCGAGGAGGCGCACGAGGACGACCTCCCCGCCGCCGCCGGCGACGGCGGCCGGCTCGCCGTGCCGTC
CGGCGGCCGCGCCGCAGAAGACGCCACCGCGAAGCAGGCGCAGACAGTGTAGACGCAGCTGGCACGCTGCGACTCGTAGC
TGTACATATGTGCAGTAGTAATACCAGTATACTGCTGTAATTACAGCAGTACAATTTACTATTACTACTCCATTTTTATT
AGGAAAATCAGCGGTAAATTCTCAGTGTGTAGCTGAGAATTATGAGATGGATGATGCCCCCTGTATTAGTGGGGTCAAAT
GAGTATTTGTCAAAAATGGTATTTTGTAATGATCTTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13708.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis