Browse Element(s) Details


Os.9901.1.S1_at

Description gb:AK070491.1
DB_XREF= gi:32980515
TID=Os.9901.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049J20, full insert sequence.
FL= gb:AK070491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2283011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22820Os.55682.1.S1_at11/113+13168311..13169148expressed protein
LOC_Os03g22830Os.9901.1.S1_at11/113+13177857..13180130Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed
LOC_Os03g22860NANA3+13194202..13195149hypothetical protein
LOC_Os03g22870Os.6507.1.S1_at11/113+13196884..13201064SAC3/GANP family protein, expressed
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9901.1.S1_at--620--6851Chr03:13178391..13178415 (25 bp)
GTTTGCCGATATGAGTTGCCACCAC
LOC_Os03g22830
Os.9901.1.S1_at--137--2151Chr03:13178368..13178392 (25 bp)
ACAGAGCTCTACTGGTGCTAGCTGC
LOC_Os03g22830
Os.9901.1.S1_at--1154--1451Chr03:13178274..13178298 (25 bp)
AGAAGGAATCCGTTCTCGTTCCTAT
LOC_Os03g22830
Os.9901.1.S1_at--962--10291Chr03:13178245..13178269 (25 bp)
TTTCCGATCATCAAGCTCTAGCTCT
LOC_Os03g22830
Os.9901.1.S1_at--377--4811Chr03:13178225..13178249 (25 bp)
GCTCTCGTTAGATTAGCCTGGTAAT
LOC_Os03g22830
Os.9901.1.S1_at--554--8571Chr03:13178207..13178231 (25 bp)
TGGTAATCTGGTTGGAGTCCTCAAG
LOC_Os03g22830
Os.9901.1.S1_at--1157--8271Chr03:13178141..13178165 (25 bp)
GGCATCTTATCGTCCAATCTGTAAT
LOC_Os03g22830
Os.9901.1.S1_at--413--8291Chr03:13178112..13178136 (25 bp)
GGCTTGTTATGATCACCACGGAATG
LOC_Os03g22830
Os.9901.1.S1_at--130--1711Chr03:13178098..13178122 (25 bp)
ACCACGGAATGCTTTTCCTTGCAAG
LOC_Os03g22830
Os.9901.1.S1_at--849--10671Chr03:13178084..13178108 (25 bp)
TTCCTTGCAAGTATATCCTTCCACA
LOC_Os03g22830
Os.9901.1.S1_at--967--9231Chr03:13178069..13178093 (25 bp)
TCCTTCCACAGCTTCATATCAGATA
LOC_Os03g22830
Target Sequence 
GTTTGCCGATATGAGTTGCCACCACAGAGCTCTACTGGTGCTAGCTGCTCGCGCACAAGATCAACCAACCAAAGTCAGAG
TTCAAGTAGCAATGGGAGAACCAATGGACGTCAAAGGAGAAGGAATCCGTTCTCGTTCCTATGGCCTTTCCGATCATCAA
GCTCTAGCTCTCGTTAGATTAGCCTGGTAATCTGGTTGGAGTCCTCAAGACTGTTTAATCGAAGATGCTCATAAAATGGG
TGTTATGCATGGCATCTTATCGTCCAATCTGTAATGTATGGCTTGTTATGATCACCACGGAATGCTTTTCCTTGCAAGTA
TATCCTTCCACAGCTTCATATCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis