Browse Element(s) Details


Os.6507.1.S1_at

Description gb:AK065347.1
DB_XREF= gi:32975365
TID=Os.6507.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013006B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006B16, full insert sequence.
FL= gb:AK065347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2287011/11SAC3/GANP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22830Os.9901.1.S1_at11/113+13177857..13180130Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed
LOC_Os03g22860NANA3+13194202..13195149hypothetical protein
LOC_Os03g22870Os.6507.1.S1_at11/113+13196884..13201064SAC3/GANP family protein, expressed
LOC_Os03g22880Os.25825.1.S1_at11/113+13201376..13204309Nucleolar protein Nop56, putative, expressed
LOC_Os03g22890Os.26043.1.S1_at11/113+13206155..13210903Nucleolar GTP-binding protein 2, putative, expressed
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6507.1.S1_at--1138--2671Chr03:13199961..13199985 (25 bp)
AAGCGTTTCTTCTGCGCCATAGCAG
LOC_Os03g22870
Os.6507.1.S1_at--301--8991Chr03:13199987..13200011 (25 bp)
TGAAGGAACCGATCTTCAGCTGCGT
LOC_Os03g22870
Os.6507.1.S1_at--830--1591Chr03:13200004..13200028 (25 bp)
AGCTGCGTCTGTTAGAACCTTTTCT
LOC_Os03g22870
Os.6507.1.S1_at--623--5431Chr03:13200018..13200432 (25 bp)
GAACCTTTTCTCAATGAGGCTCGTG
LOC_Os03g22870
Os.6507.1.S1_at--81--2991Chr03:13200443..13200467 (25 bp)
AATGTACTTCAATCATAGTGGCTAC
LOC_Os03g22870
Os.6507.1.S1_at--218--2491Chr03:13200475..13200499 (25 bp)
AACACCACCCTTTGACACATTTATC
LOC_Os03g22870
Os.6507.1.S1_at--129--1631Chr03:13200641..13200665 (25 bp)
AGCTGGACCTGGAAACTCTTTGTAG
LOC_Os03g22870
Os.6507.1.S1_at--733--6871Chr03:13200941..13200965 (25 bp)
GTATTCTCTCCAACAAAGTGTATTT
LOC_Os03g22870
Os.6507.1.S1_at--490--3651Chr03:13200996..13201020 (25 bp)
CTTCTGATGTTCTCACAATATGCTA
LOC_Os03g22870
Os.6507.1.S1_at--136--831Chr03:13201021..13201045 (25 bp)
ATGGTTGCTGGTATTGTTGGTGATT
LOC_Os03g22870
Os.6507.1.S1_at--257--6631Chr03:13201036..13201060 (25 bp)
GTTGGTGATTTGATTCTCGTCTATT
LOC_Os03g22870
Target Sequence 
AAGCGTTTCTTCTGCGCCATAGCAGCTGAAGGAACCGATCTTCAGCTGCGTCTGTTAGAACCTTTTCTCAATGAGGCTCG
TGTTAGAGCATTAATGTACTTCAATCATAGTGGCTACAAACTTCAACACCACCCTTTGACACATTTATCAGAAATCCTAA
TGATCGAGGAGCTGGACCTGGAAACTCTTTGTAGATNATGTGGACTTGAAATTAGCAACAACGAAGATACNAAAGCTNTT
GCTCCTAAACAGGCGAGTNTCTGCGTACCAGCATCANTNCCTCAAATTAATGGCATTTACATATCAAGGGAGAATCAAAN
GTGAAAAAAATATNGTAGCGAATGTAAAATGTACTCCATTCTNCACTTGTNCAGTTGTGTGCTAAAGCACCTATACTNCC
NAGTATCCAATACGGAAAGCNNTTGATCCCAGTAANANAAAATTACGAATGATAACAGNACATTTNCTTGTATTCTCTCC
AACAAAGTGTATTTNGTGAGCTTCNNNNAGTAGTTNNNTNNNNNNTNNCTTCTGATGTTCTCACAATATGCTAATGGTTG
CTGGTATTGTTGGTGATTTGATTCTCGTCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis