Browse Element(s) Details


Os.55682.1.S1_at

Description gb:AK108549.1
DB_XREF= gi:32993758
TID=Os.55682.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E02, full insert sequence.
FL= gb:AK108549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2282011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22800Os.12964.1.A1_s_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22800Os.57570.1.S1_at11/113+13143327..13148051Tubby protein, putative, expressed
LOC_Os03g22810Os.186.1.S1_at11/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22810OsAffx.18172.1.S1_x_at1/113+13158003..13163423Superoxide dismutase 1, putative, expressed
LOC_Os03g22820Os.55682.1.S1_at11/113+13168311..13169148expressed protein
LOC_Os03g22830Os.9901.1.S1_at11/113+13177857..13180130Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g22840Os.25754.2.S1_x_at2/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840OsAffx.31069.2.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22840Os.53479.1.S1_x_at1/113+13182437..13185419retrotransposon protein, putative, unclassified
LOC_Os03g22850OsAffx.20387.1.S1_x_at2/113+13186585..13192714retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55682.1.S1_at--237--9431Chr03:13168906..13168930 (25 bp)
TCGGGCCTTCCATGAAGCCTGAAAG
LOC_Os03g22820
Os.55682.1.S1_at--790--4471Chr03:13168922..13168946 (25 bp)
GCCTGAAAGGGTAGCTATAGCAATC
LOC_Os03g22820
Os.55682.1.S1_at--62--1491Chr03:13168940..13168964 (25 bp)
AGCAATCGAGTATCGGATGCGACAT
LOC_Os03g22820
Os.55682.1.S1_at--545--6351Chr03:13168955..13168979 (25 bp)
GATGCGACATACAAATCCGTATAAT
LOC_Os03g22820
Os.55682.1.S1_at--470--9431Chr03:13169002..13169026 (25 bp)
TCGGAAAATCCGTATAGTCGTAGAT
LOC_Os03g22820
Os.55682.1.S1_at--657--6511Chr03:13169048..13169072 (25 bp)
GATATATTTTGATGTCGGATGGGAC
LOC_Os03g22820
Os.55682.1.S1_at--637--6231Chr03:13169065..13169089 (25 bp)
GATGGGACGTACAAATCCGTATAGT
LOC_Os03g22820
Os.55682.1.S1_at--734--2271Chr03:13169077..13169101 (25 bp)
AAATCCGTATAGTCCTAAGTTGATA
LOC_Os03g22820
Os.55682.1.S1_at--32--6511Chr03:13169098..13169122 (25 bp)
GATATATTCTAGCTGGAGGGAGTAC
LOC_Os03g22820
Os.55682.1.S1_at--920--7992Chr03:13169112..13169136 (25 bp)
GGAGGGAGTACAAAACTGACCAGTA
LOC_Os03g22820
Os.55682.1.S1_at--995--2371Chr03:13169124..13169148 (25 bp)
AAACTGACCAGTAACGTATGTGTGC
LOC_Os03g22820
Target Sequence 
TCGGGCCTTCCATGAAGCCTGAAAGGGTAGCTATAGCAATCGAGTATCGGATGCGACATACAAATCCGTATAATTCTAGA
TTGATATATTATGATATCGGAAAATCCGTATAGTCGTAGATTGATATATTTTGATGTAGATTGATATATTTTGATGTCGG
ATGGGACGTACAAATCCGTATAGTCCTAAGTTGATATATTCTAGCTGGAGGGAGTACAAAACTGACCAGTAACGTATGTG
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis