Browse Element(s) Details


Os.32544.1.S1_at

Description gb:AK103773.1
DB_XREF= gi:32988982
TID=Os.32544.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033143M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033143M03, full insert sequence.
FL= gb:AK103773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1893011/11expressed protein
LOC_Os03g226901/11nucleoporin interacting component, putative, expressed
LOC_Os02g189541/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18890OsAffx.5954.5.S1_x_at7/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.3.S1_x_at3/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.1.S1_x_at2/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18890OsAffx.5954.2.S1_at1/117+11190163..11195478retrotransposon protein, putative, unclassified
LOC_Os07g18900NANA7+11198632..11201412hypothetical protein
LOC_Os07g18910NANA7+11202218..11203298retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.22699.1.S1_x_at3/117+11203747..11207816retrotransposon protein, putative, unclassified
LOC_Os07g18920OsAffx.13786.1.S1_x_at2/117+11203747..11207816retrotransposon protein, putative, unclassified
LOC_Os07g18930Os.32544.1.S1_at11/117+11216329..11219609expressed protein
LOC_Os07g18950NANA7+11223005..11223478hypothetical protein
LOC_Os07g18960OsAffx.28515.1.S1_at11/117+11225193..11225600hypothetical protein
LOC_Os07g18970Os.45957.3.S1_x_at9/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.45957.4.S1_x_at6/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.49445.1.S1_at1/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18980NANA7+11232358..11232804hypothetical protein
LOC_Os07g18990Os.24103.1.A1_at11/117+11239665..11240387Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32544.1.S1_at--868--5011Chr07:11216904..11216928 (25 bp)
GCAGGTCATTGCTTCTATCGATCGA
LOC_Os07g18930
Os.32544.1.S1_at--709--10151Chr07:11216919..11217037 (25 bp)
TATCGATCGAGTTCTAGGTTGGCAG
LOC_Os07g18930
Os.32544.1.S1_at--624--731Chr07:11217101..11217125 (25 bp)
ATGTTCGTTGATATGGACTTCCAGA
LOC_Os07g18930
Os.32544.1.S1_at--562--2691Chr07:11217128..11217151 (24 bp)
AAGCTGATCGACAGCCTATCAAGGG
LOC_Os07g18930
Os.32544.1.S1_at--771--3211Chr07:11219211..11219235 (25 bp)
CAAGGATTTGACACTGCTGGTGCAA
LOC_Os07g18930
Os.32544.1.S1_at--927--7652Chr07:11219323..11219347 (25 bp)
GGGATCGACATAGGCGCGGAACTCT
LOC_Os07g18930
Os.32544.1.S1_at--724--9491Chr07:11219345..11219369 (25 bp)
TCTCGGTGCCACACTTTGGACTGAG
LOC_Os07g18930
Os.32544.1.S1_at--871--6791Chr07:11219385..11219409 (25 bp)
GTTTTGTCTTTTACCCAGTGCTAAG
LOC_Os07g18930
Os.32544.1.S1_at--426--68912Chr12:17474761..17474785 (25 bp)
GTATATATGCACTTGTTCTCCTGGT
NONE
Os.32544.1.S1_at--1028--67130Chr12:17474775..17474799 (25 bp)
GTTCTCCTGGTGATGCTAACCGAAT
NONE
Os.32544.1.S1_at--520--9692Chr07:11219521..11219545 (25 bp)
TCAAACCAAGTCCTATTCGGCCTAA
LOC_Os07g18930
Target Sequence 
GCAGGTCATTGCTTCTATCGATCGAGTTCTAGGTTGGCAGATTGTTCTTATTTTGTGTTTACTGGATCAGCTGGGCTGCA
AGGTAGCGGTACTGGACGTGGTCATGTTCGTTGATATGGACTTCCAGAACAAGCTGATCGACAGCCTATCAAGGGAACCC
CAAGGATTTGACACTGCTGGTGCAAAATACTCACTACAGGTAATATGTAGTATTATTAACTACACAACAGAGTAATATGT
AAAATGCATACAACGGAGTTGTTGGATTACCTGGGATCGACATAGGCGCGGAACTCTCGGTGCCACACTTTGGACTGAGG
GAGAGTTATGTGTTGTTTTGTCTTTTACCCAGTGCTAAGTGCTATAAGGCTGCATGTAATTCTTTGTTATGTGCTGTGAT
TTTTTATACTATGTATGTATATATGCACTTGTTCTCCTGGTGATGCTAACCGAATAGGACTTGGTATAATTCAAACCAAG
TCCTATTCGGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis