Browse Element(s) Details


Os.24103.1.A1_at

Description gb:AK062503.1
DB_XREF= gi:32972521
TID=Os.24103.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24103 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-B03, full insert sequence.
FL= gb:AK062503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1899011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18930Os.32544.1.S1_at11/117+11216329..11219609expressed protein
LOC_Os07g18950NANA7+11223005..11223478hypothetical protein
LOC_Os07g18960OsAffx.28515.1.S1_at11/117+11225193..11225600hypothetical protein
LOC_Os07g18970Os.45957.3.S1_x_at9/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.45957.4.S1_x_at6/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.49445.1.S1_at1/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18980NANA7+11232358..11232804hypothetical protein
LOC_Os07g18990Os.24103.1.A1_at11/117+11239665..11240387Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g19000OsAffx.16332.1.S1_x_at11/117+11250341..11250942expressed protein
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009627biological_processsystemic acquired resistance
GO:0005319molecular_functionlipid transporter activity
GO:0008289molecular_functionlipid binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.24103.1.A1_at--252--5111Chr07:11239817..11239841 (25 bp)
GCACGGCATCTGCAACCTGTCGGAC
LOC_Os07g18990
Os.24103.1.A1_at--438--2171Chr07:11239891..11239915 (25 bp)
ACACGCCGTCGTCCGAGTGCTGCGA
LOC_Os07g18990
Os.24103.1.A1_at--318--7291Chr07:11239940..11239964 (25 bp)
GTGCCTGTGCCGGTACAAGGGCTCC
LOC_Os07g18990
Os.24103.1.A1_at--679--3711Chr07:11240066..11240090 (25 bp)
CTAGCTAGCTGATGGCAAGCACAAA
LOC_Os07g18990
Os.24103.1.A1_at--435--2071Chr07:11240086..11240110 (25 bp)
ACAAACTACAGTGCGGCGACCTCGA
LOC_Os07g18990
Os.24103.1.A1_at--106--6391Chr07:11240109..11240133 (25 bp)
GATCGCCATGTTGCTGCAATTCAAT
LOC_Os07g18990
Os.24103.1.A1_at--1045--151Chr07:11240132..11240156 (25 bp)
ATTATGCAGTCGTGACCACTAGCGC
LOC_Os07g18990
Os.24103.1.A1_at--797--5851Chr07:11240145..11240169 (25 bp)
GACCACTAGCGCTACCAATATATAG
LOC_Os07g18990
Os.24103.1.A1_at--945--311Chr07:11240203..11240227 (25 bp)
ATACTATGCGATCGATGAGCCCGGC
LOC_Os07g18990
Os.24103.1.A1_at--86--6891Chr07:11240262..11240286 (25 bp)
GTATTTATGCTCTTCTTTCAGTATC
LOC_Os07g18990
Os.24103.1.A1_at--561--9092Chr07:11240269..11240293 (25 bp)
TGCTCTTCTTTCAGTATCATCAAAA
LOC_Os07g18990
Target Sequence
GCACGGCATCTGCAACCTGTCGGACGCGGGGCTCCAGGCGTGCAAGCCGGCGGCCGCCGTGCGCAACCCGGCGGACACGC
CGTCGTCCGAGTGCTGCGACGCGCTGGCCGCCGCCGACCTGCCGTGCCTGTGCCGGTACAAGGGCTCCGCCGGCGCCCGC
GTGTGGGTGAGGTTCTACGGGATCGACCTCAACCGCGCCATGACGCTGCCGGGCAAGTGCGGCCTCACCTTGCCGGCGCA
CTGCTAGTGCTAGCTAGCTGATGGCAAGCACAAACTACAGTGCGGCGACCTCGATCGCCATGTTGCTGCAATTCAATTAT
GCAGTCGTGACCACTAGCGCTACCAATATATAGCATATATATAGTAGTAATATTAATATATATGTCATACTATGCGATCG
ATGAGCCCGGCAAGGGGAGATGAATAAATTTGGCAACNNATATATATGTATTTATGCTCTTCTTTCAGTATCATCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24103.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis