Browse Element(s) Details


OsAffx.5366.1.S1_at

Description tigr:9635.m01918
TID=OsAffx.5366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g190209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18990Os.24103.1.A1_at11/117+11239665..11240387Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g19000OsAffx.16332.1.S1_x_at11/117+11250341..11250942expressed protein
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5366.1.S1_at--996--8011Chr07:11259530..11259554 (25 bp)
GGAGGACTTACAGTGCTTACTACAA
LOC_Os07g19020
OsAffx.5366.1.S1_at--461--9891NONE
TACTACAAGCGGGAGTAGTTTCCTT
NONE
OsAffx.5366.1.S1_at--737--1611NONE
AGCGGGAGTAGTTTCCTTGTATCAA
NONE
OsAffx.5366.1.S1_at--237--9711Chr07:11260673..11260697 (25 bp)
TCAACAGATGGCTTAGAACCAGATC
LOC_Os07g19020
OsAffx.5366.1.S1_at--517--8491Chr07:11260681..11260701 (21 bp)
TGGCTTAGAACCAGATCCATGGATT
LOC_Os07g19020
OsAffx.5366.1.S1_at--665--1291Chr07:11260693..11261000 (25 bp)
AGATCCATGGATTGGTGCTGTTCTT
LOC_Os07g19020
OsAffx.5366.1.S1_at--94--7791Chr07:11260989..11261013 (25 bp)
GGTGCTGTTCTTAGTCAAGGTTCTC
LOC_Os07g19020
OsAffx.5366.1.S1_at--953--10391Chr07:11260999..11261023 (25 bp)
TTAGTCAAGGTTCTCACCCTGTGGC
LOC_Os07g19020
OsAffx.5366.1.S1_at--460--1811Chr07:11261014..11261038 (25 bp)
ACCCTGTGGCTTTCTTCAATGAAAA
LOC_Os07g19020
OsAffx.5366.1.S1_at--235--3111Chr07:11261037..11261061 (25 bp)
AATTTAACAGGTGCACAACTTCGAT
LOC_Os07g19020
OsAffx.5366.1.S1_at--182--1051Chr07:11261045..11261069 (25 bp)
AGGTGCACAACTTCGATATTCTACT
LOC_Os07g19020
Target Sequence 
GGAGGACTTACAGTGCTTACTACAAGCGGGAGTAGTTTCCTTGTATCAACAGATGGCTTAGAACCAGATCCATGGATTGG
TGCTGTTCTTAGTCAAGGTTCTCACCCTGTGGCTTTCTTCAATGAAAATTTAACAGGTGCACAACTTCGATATTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis