Browse Element(s) Details


OsAffx.5367.1.S1_at

Description tigr:9635.m01921
TID=OsAffx.5367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1905010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19000OsAffx.16332.1.S1_x_at11/117+11250341..11250942expressed protein
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed
LOC_Os07g19070Os.15959.1.S1_at11/117+11286296..11290354expressed protein
LOC_Os07g19070OsAffx.5368.1.S1_at1/117+11286296..11290354expressed protein
LOC_Os07g19080OsAffx.5369.1.S1_at11/117+11292030..11293410hypothetical protein
LOC_Os07g19090OsAffx.31811.3.S1_x_at9/117+11297578..11298381Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5367.1.S1_at--14--6451Chr07:11274952..11274976 (25 bp)
GATCACGGACAAAATCTACATCGAT
LOC_Os07g19050
OsAffx.5367.1.S1_at--409--9531Chr07:11274966..11274990 (25 bp)
TCTACATCGATCTCAACGTGTTTGG
LOC_Os07g19050
OsAffx.5367.1.S1_at--181--2591NONE
AACGTGTTTGGCAGAGTGAGAGTAA
NONE
OsAffx.5367.1.S1_at--784--7051Chr07:11276143..11276167 (25 bp)
GTAAGGTACTACATCGCACTGGCCA
LOC_Os07g19050
OsAffx.5367.1.S1_at--872--8451Chr07:11276162..11276186 (25 bp)
TGGCCACGAGAGCACCATCGGTGAA
LOC_Os07g19050
OsAffx.5367.1.S1_at--1035--9791Chr07:11276190..11276214 (25 bp)
TAACTTGGAGTTTGTGTCAACCCGT
LOC_Os07g19050
OsAffx.5367.1.S1_at--1079--8031Chr07:11276196..11276217 (22 bp)
GGAGTTTGTGTCAACCCGTGAGTAT
LOC_Os07g19050
OsAffx.5367.1.S1_at--966--2611Chr07:11276208..11276283 (25 bp)
AACCCGTGAGTATGTGTTGACTAAG
LOC_Os07g19050
OsAffx.5367.1.S1_at--259--7291Chr07:11276299..11276323 (25 bp)
GTGCCGACTCACACTAATCCAAAGA
LOC_Os07g19050
OsAffx.5367.1.S1_at--450--6331Chr07:11276328..11276352 (25 bp)
GATGCAGACTACTGAGATCATTCAT
LOC_Os07g19050
OsAffx.5367.1.S1_at--618--6431Chr07:11276343..11276367 (25 bp)
GATCATTCATGGAAAACTCCAACTG
LOC_Os07g19050
Target Sequence 
GATCACGGACAAAATCTACATCGATCTCAACGTGTTTGGCAGAGTGAGAGTAAGGTACTACATCGCACTGGCCACGAGAG
CACCATCGGTGAAAGATAACTTGGAGTTTGTGTCAACCCGTGAGTATGTGTTGACTAAGAAGAAGGCCAGAGGGGTGCCG
ACTCACACTAATCCAAAGAAAGTGATGCAGACTACTGAGATCATTCATGGAAAACTCCAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis