Browse Element(s) Details


OsAffx.5368.1.S1_at

Description tigr:9635.m01923
TID=OsAffx.5368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g190701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed
LOC_Os07g19070Os.15959.1.S1_at11/117+11286296..11290354expressed protein
LOC_Os07g19070OsAffx.5368.1.S1_at1/117+11286296..11290354expressed protein
LOC_Os07g19080OsAffx.5369.1.S1_at11/117+11292030..11293410hypothetical protein
LOC_Os07g19090OsAffx.31811.3.S1_x_at9/117+11297578..11298381Zinc knuckle family protein
LOC_Os07g19110OsAffx.828.1.S1_x_at1/117+11312743..11313198retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5368.1.S1_at--1089--2511Chr07:11286667..11286691 (25 bp)
AACTACAAATTGAGCTCCAAGGCAA
LOC_Os07g19070
OsAffx.5368.1.S1_at--981--131Chr07:11286287..11286471 (25 bp)
ATTACAGACACAGCTTAACCAGGCG
NONE
OsAffx.5368.1.S1_at--16--9791Chr07:11286272..11286296 (25 bp)
TAACCAGGCGAGTACGATTCGGTTT
NONE
OsAffx.5368.1.S1_at--482--1891Chr07:11286259..11286283 (25 bp)
ACGATTCGGTTTTGGGTGATACAGA
NONE
OsAffx.5368.1.S1_at--1021--5851Chr07:11284993..11285017 (25 bp)
GAGCCACCGAAGCTTATCTCACTGG
NONE
OsAffx.5368.1.S1_at--282--10431Chr07:11284980..11285004 (25 bp)
TTATCTCACTGGAGAACCTCTGCCG
NONE
OsAffx.5368.1.S1_at--822--9171Chr07:11284960..11284984 (25 bp)
TGCCGCCAAGCTGTTGACATTGCAA
NONE
OsAffx.5368.1.S1_at--739--10751Chr07:11284947..11284971 (25 bp)
TTGACATTGCAATCAACAACCTCCA
NONE
OsAffx.5368.1.S1_at--219--2711Chr07:11284449..11284469 (21 bp)
AAGCTAGCCGCGTGCTCAACAGTAT
NONE
OsAffx.5368.1.S1_at--910--2131Chr07:11284431..11284455 (25 bp)
ACAGTATCCTCACACACAGATCTGG
NONE
OsAffx.5368.1.S1_at--1121--4471Chr07:11284327..11284351 (25 bp)
GCCGGCTCCACTATCGGGATTGGCT
NONE
Target Sequence 
AACTACAAATTGAGCTCCAAGGCAAGGAAGATAAATCCAAGGAAGTCAAGAAGCTTCGTGCGGAATTAGCCAGCCTTAGT
GAAAAGATGAAGAAGCTAAAATCAGAATCGGAGGAGCATGAAAGGCAGAGATTGGAGGCCGAAGCACATGTCAATGCCCT
ACAGAAGCAATCTGAGGAGCTCCTGCTTGAATATGACCGGTTATTGGAAGATAACCAGATATTACAGACACAGCTTAACC
AGGCGAGTACGATTCGGTTTTGGGTGATACAGAGGGAGGCAAAATTGAACCTCACCTCCACCGAGCCACCGAAGCTTATC
TCACTGGAGAACCTCTGCCGCCAAGCTGTTGACATTGCAATCAACAACCTCCACGAAGCTAGCCGCGTGCTCAACAGTAT
CCTCACACACAGATCTGGATGCAAAGGGGAAAATGGGAAGAAAAAGGAAAGAGAAAGGAGGAAGAAAAGAAAGGAAAAAG
AGGGAGGCGGCGTCACTGCCGGCTCCACTATCGGGATTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis