Browse Element(s) Details


Os.15959.1.S1_at

Description gb:AK064969.1
DB_XREF= gi:32974987
TID=Os.15959.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001B09, full insert sequence.
FL= gb:AK064969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1907011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein
LOC_Os07g19060Os.34129.1.S1_x_at10/117+11278610..11283630Transport protein particle component, Bet3 containing protein, expressed
LOC_Os07g19070Os.15959.1.S1_at11/117+11286296..11290354expressed protein
LOC_Os07g19070OsAffx.5368.1.S1_at1/117+11286296..11290354expressed protein
LOC_Os07g19080OsAffx.5369.1.S1_at11/117+11292030..11293410hypothetical protein
LOC_Os07g19090OsAffx.31811.3.S1_x_at9/117+11297578..11298381Zinc knuckle family protein
LOC_Os07g19110OsAffx.828.1.S1_x_at1/117+11312743..11313198retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15959.1.S1_at--241--10011Chr07:11286858..11286882 (25 bp)
TAGAAGGATCCTTTAACCCTGCTGC
LOC_Os07g19070
Os.15959.1.S1_at--829--3831Chr07:11286840..11286864 (25 bp)
CTGCTGCACATATTTGTAGGCCATT
LOC_Os07g19070
Os.15959.1.S1_at--320--7871Chr07:11286791..11286815 (25 bp)
GGTTTACTTGATGTTCCAGGGTACA
LOC_Os07g19070
Os.15959.1.S1_at--770--10211Chr07:11286448..11286472 (25 bp)
TATTACAGACACAGGTTCTTTCTCT
LOC_Os07g19070
Os.15959.1.S1_at--249--1011Chr07:11286436..11286460 (25 bp)
AGGTTCTTTCTCTCAGAAGCTGAGT
LOC_Os07g19070
Os.15959.1.S1_at--597--5391Chr07:11286421..11286445 (25 bp)
GAAGCTGAGTCTGCAAATGTACAAC
LOC_Os07g19070
Os.15959.1.S1_at--1117--9831Chr07:11286402..11286426 (25 bp)
TACAACTTGTGTGATGGCCATACTC
LOC_Os07g19070
Os.15959.1.S1_at--245--8871Chr07:11286391..11286415 (25 bp)
TGATGGCCATACTCTTACAAAAGGG
LOC_Os07g19070
Os.15959.1.S1_at--610--10351Chr07:11286348..11286372 (25 bp)
TTTATTTACTAGCTCAGATCTCTGT
LOC_Os07g19070
Os.15959.1.S1_at--119--3591Chr07:11286316..11286340 (25 bp)
CATTTGTCATGTCTTTGTTGCTCCA
LOC_Os07g19070
Os.15959.1.S1_at--418--8811Chr07:11286301..11286325 (25 bp)
TGTTGCTCCATGTTCTTTTTGTGAC
LOC_Os07g19070
Target Sequence 
TAGAAGGATCCTTTAACCCTGCTGCACATATTTGTAGGCCATTTGATTTGATACAAGTGAATTTGATGGTTTACTTGATG
TTCCAGGGTACATACTATTCCTTGCATTTGTCATTGATCGGTTACACCACTACCACCGGAAGCTGACTATACTGAAGAAA
ACCGCAAACACCTCCAGGGAGGAGGTTNGAGAANACTACANAATTGAGCNTCCANANGCAAGGNAAGATAAANTCCNAAG
GAAGTCNAAGAAGCTTCGTGCGGAATTANCCAGCCTTAGTGAAAAGATGAAGAAGCTAAAATCAGAATCGGAGGAGCATG
AAAGGCAGAGATTGGAGGCCGAAGCACATGTCAATGCCCTACNNAAGCANATCTGAGGAGCTCCTGCTTGAATATGACCG
GTTATTGGAAGATAACCAGATATTACAGACACAGGTTCTTTCTCTCAGAAGCTGAGTCTGCAAATGTACAACTTGTGTGA
TGGCCATACTCTTACAAAAGGGGGATTGGANTGCTATGATTTTATTTACTAGCTCAGATCTCTGTAAGATATCATTTGTC
ATGTCTTTGTTGCTCCATGTTCTTTTTGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis