Browse Element(s) Details


OsAffx.16332.1.S1_x_at

Description tigr:9635.m01916
TID=OsAffx.16332.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18960OsAffx.28515.1.S1_at11/117+11225193..11225600hypothetical protein
LOC_Os07g18970Os.45957.3.S1_x_at9/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.45957.4.S1_x_at6/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18970Os.49445.1.S1_at1/117+11226213..11231690retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18980NANA7+11232358..11232804hypothetical protein
LOC_Os07g18990Os.24103.1.A1_at11/117+11239665..11240387Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g19000OsAffx.16332.1.S1_x_at11/117+11250341..11250942expressed protein
LOC_Os07g19009NANA7+11254554..11255343NA
LOC_Os07g19020OsAffx.5366.1.S1_at9/117+11259497..11261099hypothetical protein
LOC_Os07g19020OsAffx.535.1.S1_at1/117+11259497..11261099hypothetical protein
LOC_Os07g19030Os.8204.1.S1_at11/117+11267234..11271797Tic22-like family protein, expressed
LOC_Os07g19040OsAffx.16333.1.S1_at11/117+11272299..11273192Hevamine A precursor, putative
LOC_Os07g19050OsAffx.5367.1.S1_at10/117+11274920..11276403hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16332.1.S1_x_at--390--7731Chr07:11250460..11250484 (25 bp)
GGTGGCGTCCCTAGCCGCGGCGCTG
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--740--4131Chr07:11250480..11250504 (25 bp)
CGCTGGGCGCGCAGGGCATCTGCAA
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--855--1071Chr07:11250492..11250516 (25 bp)
AGGGCATCTGCAACATGTCGAACGG
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--773--7591Chr07:11250493..11250517 (25 bp)
GGGCATCTGCAACATGTCGAACGGC
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--1138--8251Chr07:11250494..11250518 (25 bp)
GGCATCTGCAACATGTCGAACGGCG
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--592--471Chr07:11250497..11250521 (25 bp)
ATCTGCAACATGTCGAACGGCGACT
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--201--7231Chr07:11250508..11250532 (25 bp)
GTCGAACGGCGACTTCAAGCTGTGC
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--980--5451Chr07:11250511..11250535 (25 bp)
GAACGGCGACTTCAAGCTGTGCCAG
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--205--4611Chr07:11250516..11250540 (25 bp)
GCGACTTCAAGCTGTGCCAGCCGGC
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--201--3931Chr07:11250543..11250567 (25 bp)
CGGCCGTGAGCGACCCGACGGACGG
LOC_Os07g19000
OsAffx.16332.1.S1_x_at--79--5751Chr07:11250563..11250587 (25 bp)
GACGGCCCGTCGGCGGAGTGCTGCG
LOC_Os07g19000
Target Sequence 
GGTGGCGTCCCTAGCCGCGGCGCTGGGCGCGCAGGGCATCTGCAACATGTCGAACGGCGACTTCAAGCTGTGCCAGCCGG
CGGCGGCCGTGAGCGACCCGACGGACGGCCCGTCGGCGGAGTGCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16332.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis